FASTA file parser to extract or pipeline amino acid sequences.

Projet de BioInformatique dans le cadre du cours Info-F-208

ECS 124 - Theory and Practice of Bioinformatics

Bioinformatics

Download all .genomic.fa.gz files from https://parasite.wormbase.org.

A short script for searching in Uniprot using RESTful APIs

Create required reference genome index files for WGS data analysis

An easy fragment of code to read in fasta format files

Sequence Alignment

Python Tools for Computational Molecular Biology

StretchFinder is a tool that helps to analyze the codon composition in genomes. It has the basic pipelines needed in order to draw preliminary conclusions about the codon usage and composition of genomes.

a python utility to subset multisequence file based on identifiers from external text file

perform interval queries on an indexed fasta file

EPITECH PROJECT - SYN POOL

Lift same species genome co-ordinates from one assembly to another

A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.

My bioinformatics scripts

Tool for fasta/fastq files compression

convert gene to genome coordinates