A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
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Updated
Feb 1, 2024 - Python
A Reproducible Workflow for Structural and Functional Connectome Ensemble Learning
White matter tractography clustering and more...
Connectome Mapper 3 is a BIDS App that implements full anatomical, diffusion, resting/state functional MRI, and recently EEG processing pipelines, from raw T1 / DWI / BOLD , and preprocessed EEG data to multi-resolution brain parcellation with corresponding connection matrices.
Introduction to dMRI
MITK Diffusion - Official part of the Medical Imaging Interaction Toolkit
KUL/UZ NeuroImaging Suite. A set of tools for brain and spine MRI analysis.
ORG Fiber Clustering White Matter Atlas
A hands-free DTI, DKI, FBI and FBWM preprocessing pipeline. Information on algorithms and preprocessing steps are available at https://www.biorxiv.org/content/10.1101/2021.10.20.465189v1 A video tutorial on PyDesigner and its usage is now available at https://www.youtube.com/watch?v=mChQFuQqX3k
MRtrix3Tissue adds capabilities for 3-Tissue CSD modelling and analysis to a complete version of MRtrix3.
ElikoPy is Python library aiming at easing the processing of diffusion imaging for microstructural analysis.
Tractography learning
Automated tractography using MRTrix3 CSD based on subject-specific parcellations from FreeSurfer and MultiScaleBrainParcellator
SlicerDMRI organization website repository
SlicerDMRI tutorial repository
Analysis of the structural connectivity of diffusion data
This repository contains the code and documentation for the Brainhack School project on exploring the structure-function coupling and segregation analysis in video-watching electroencephalography (EEG) data. The project aims to investigate how the electrophysiological activity during video-watching is related to the underlying anatomical structure
Assessing microstructural brain differences in epileptic patients with vagus nerve stimulation via diffusion MRI, tractography and machine learning
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