Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
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Updated
Jun 12, 2024 - Python
Computational Pathology Toolbox developed by TIA Centre, University of Warwick.
Machine learning tool for analysis of lung adenocarcinoma tumors
cuCIM - RAPIDS GPU-accelerated image processing library
QuPath - Bioimage analysis & digital pathology
Awesome List of Digital and Computational Pathology Resources
Source code associated to the article "MS-CLAM: Mixed supervision for the classification and localization of tumors in Whole Slide Images" published in Medical Image Analysis.
[ISBI 2024] Accurate Subtyping of Lung Cancers by Modelling Class Dependencies
Library for Digital Pathology Image Processing
Digital pathology image viewer with support for human/machine generated annotations and markups.
A simple python program to organize a digital slide collection as an SQLite database
PAthological QUpath Obsession - QuPath and Python conversations
Interoperable web-based slide microscopy viewer and annotation tool
On the evaluation of deep learning interpretability methods for medical images under the scope of faithfulness
Tools for computational pathology
Deep Learning Inferred Multiplex ImmunoFluorescence for IHC Image Quantification (https://deepliif.org) [Nature Machine Intelligence'22, CVPR'22, MICCAI'23, Histopathology'23, MICCAI'24]
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.
A framework for high-performance medical image processing, neural network inference and visualization
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Demographic bias in misdiagnosis by computational pathology models - Nature Medicine
DeeperHistReg - Source Code
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