Enumerates Conway's Game of Life's "still lifes" (fixed points) via De Bruijn diagrams. Caml light implementation (boo !)
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Updated
Jun 9, 2015 - OCaml
Enumerates Conway's Game of Life's "still lifes" (fixed points) via De Bruijn diagrams. Caml light implementation (boo !)
Computational Biology Assignments
Find bubbles in the Colored de Bruijn Graph to reconstruct phylogenetic trees
De novo genome assembly and multisample variant calling
Genome assembler de novo that uses De Bruijn graph.
Germline DNM caller based on LdBG assembly of pathogens
A program which can assembing .fasta file generated by Next Generation Sequencing(NGS) de novo using De Bruijn Graph Algorithm, and can also choose to map(BLAST) the contigs to a reference sequence
What I learned from Data Structures and Algorithms Specialization on Coursera.
Souce code for my MSc Thesis in Computer Science “Nested Marvellous Sequences”
Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads
Computational programs and algorithms used to convert information from biochemical experiments (DNA/RNA/Protein/DNA chip/NGS) into useful information and data.
Sparse Binary Relation Representations for Genome Graph Annotation
Streaming de Bruijn and Compact de Bruijn Graph Algorithms
A fast constructor of the compressed de Bruijn graph from many genomes
A fast whole-genome aligner based on de Bruijn graphs
ProphAsm – a rapid computation of simplitigs directly from k-mer sets
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