cross-contamination of plant virus base on read assignation
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Updated
Sep 14, 2023 - Python
cross-contamination of plant virus base on read assignation
Escape if you can! A radiological event has occurred and you have to find your way out. Pick up items along the way that may help or harm you. When you've accumulate too much radiation it's game over.
DecontaMiner is a tool designed and developed to investigate the presence of contaminating sequences in unmapped NGS data. It can suggest the presence of contaminating organisms in sequenced samples, that might derive either from laboratory contamination or from their biological source, and in both cases can be considered as worthy of further in…
Python based machine-learning scripts that generate real-time predictions of the water quality on the shores of the larger Montreal island for the water activities aficionados The predictions are displayed online interactively on an OpenShift server built with the LAMP stack.
Conta is an R package to detect cross contamination and source of contamination
[IEEE ICASSP 2023] "Robust Subspace Tracking with Contamination Mitigation via Alpha-Divergence". In 48th IEEE International Conference on Acoustics, Speech, & Signal Processing, 2023.
Benchmarking different ways of doing read (taxonomic) classification, with a focus on removal of contamination and MTB classification
Automated pipeline for HGT and contaminant detection in an assembled, annotated genome
Shiny app for calculating & plotting data for UCL's and MK Trends
Parameter estimation of seeding and contamination rates on a triangular lattice using the method of simulated moments (MSM).
Contamination detection workflow based on mtDNA
Water quality monitoring in river for pollution control applicating continuous conductivity monitoring. This is for evaluation of pollution level and its fluctuation as BOD5 converting by Conductivity value utilizing Arduino Nano.
Nextflow pipeline for Conpair (concordance and contamination estimator)
autoConTAMPR: Automatic Contingency Table Analysis of Minority Peak Ranks
Module and script to remove contamination in assembled genomes before submission to ncbi
Analytical solution for Contaminant Transport in Groundwater
R codes developed for East Chicago PCB soil paper. Codes describe how to create the maps and figures (ECSoilFigures.R), as well as all the statistical analyses (ECSoilStatTest.R) performed in the paper. All data are available and download from Pangaea. This is part of Project 6 of the ISRP (https://iowasuperfund.uiowa.edu/)
Tumour-in-Normal Contamination assessment with evolutionary theory.
Remove human reads from a sequencing run
Godot educational game about oceans.
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