Flood-Filling Networks for instance segmentation in 3d volumes.
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Updated
May 23, 2024 - Python
Flood-Filling Networks for instance segmentation in 3d volumes.
PyTorch Connectomics: segmentation toolbox for EM connectomics
Collaborative Annotation Toolkit for Massive Amounts of Image Data
Preprocessing and reconstruction of diffusion MRI
Graph theory analysis of brain MRI data
Read and write Neuroglancer datasets programmatically.
Euclidean distance & signed distance transform for multi-label 3D anisotropic images using marching parabolas.
Open Scripts and pipelines from the Multimodal Imaging and Connectome Analysis Lab at the Montreal Neurological Institute
Distributed, Versioned, Image-oriented Dataservice
The ENIGMA Toolbox is an open-source repository for accessing 100+ ENIGMA statistical maps, visualizing cortical and subcortical surface data, and relating neuroimaging findings to micro- and macroscale brain organization. 🤠
NeuroAnatomy Toolbox: An R package for the (3D) visualisation and analysis of biological image data, especially tracings of single neurons.
Extraction of 3D skeletons from meshes.
Skeletonize densely labeled 3D image segmentations with TEASAR. (Medial Axis Transform)
KNOSSOS is a software tool for the visualization and annotation of 3D image data and was developed for the rapid reconstruction of neural morphology and connectivity.
Visualize, share and annotate your large 3D images online
Scalable Neuroglancer compatible Downsampling, Meshing, Skeletonizing, Contrast Normalization, Transfers and more.
Flood filling networks for segmenting electron microscopy of neural tissue
Distributed segmentation for bio-image-analysis
This is the python client for accessing REST APIs within the Connectome Annotation Versioning Engine.
Scalable Optical Flow-based Image Montaging and Alignment
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