Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
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Updated
Oct 15, 2010 - C++
Command-line program to wrap dagchainer and combine pairwise results into multi-alignments in column format
basic visualization of hmm profile matches to multiple fasta files
Discover pseudogenes in a newly assembled genome, using reference gene/protein sequences.
A tool for comparative genomics analysis that assesses the species relationship considering the phylogenetic distance provided by several gene trees.
Donut: automated Circos visualization of multiple fasta files within a docker image
Guided synteny alignment between duplicated genomes (within specified quota constraint)
Phylogenomics analyses for 1KFG project
Comparative Genomics and Visualisation teaching module
Toolkit for comparative metagenomics in EDGE
A pipeline to construct phylogenetic tree using BUSCOs
Automated Efficient Mixed Model Association Studies - R Package
Enables the calculation of phylogenies based on single copy core genome gene products, based on bidirectional BLAST results obtained with proteinortho
Generate GeneContent trees based on based the presence or absence of Genes from a given bacterial pan-genome using bidirectional BLAST results obtained with proteinortho
Calculates pairwise pocp values from proteinortho5 results.
Archive of personal scripts repository from my various projects in the Buell Lab at MSU (Jan. 2008 - Apr. 2011)
Wrapper script to concatenate, align, and construct phylogenetic trees of BUSCOs
CAMSA: a tool for Comparative Analysis and Merging of Scaffold Assemblies
Genome-based taxonomy of Lactobacillaceae on the species level
Genome-based taxonomy of Lactobacillaceae on the genus level
Code associé à un article dans Linux Magazine n°212 février 2018
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