📊 Codon usage tables in code-friendly format + Python bindings
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Updated
May 5, 2022 - Python
📊 Codon usage tables in code-friendly format + Python bindings
A slimmed down fork of CodonW with python bindings
🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
Research on position-dependent hydrogen bonds per codon
Simple Python program to perform codon optimization or heterology calculations.
Python package of codon usage bias analysis tools
Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Şen et al. (2020)
A tool with nice GUI to visualize the codon usage frequencies in whole genomes
A python project for analysis of codon usage for gene or genome analysis
Python3 implementation of commonly used codon usage statistics
A Novel Approach to Codon Optimization Based on Machine Learning and Genetic Algorithm
Currently, we don't have the bandwidth to update and maintain the Python version; please use the R version instead. (https://github.com/mt1022/cubar)
R Package for Codon Usage Bias Analysis
Calculating AA frequencies from codon design, and vice versa
Methods and data to reproduce the investigation on the adaptive trait found in the genes of the methane oxidation metabolic module of type Ia methanotrophs
Codon decoder, taking a input from user, then the program will display the type protein created by the codon
A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.
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