Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)
-
Updated
Feb 3, 2019 - D
Source code to accompany manuscript entitled "Gaussian-distributed codon frequencies of genomes" (Khomtchouk & Nonner, 2019)
Methods and data to reproduce the investigation on the adaptive trait found in the genes of the methane oxidation metabolic module of type Ia methanotrophs
Codon decoder, taking a input from user, then the program will display the type protein created by the codon
Research on position-dependent hydrogen bonds per codon
A tool for dynamically calculating the codon usage bias in bacterial genomes and querying of a database for Codon Bias statistical analysis
Analysis of codon usage in oncogene families.
A tool with nice GUI to visualize the codon usage frequencies in whole genomes
Codonopt program is designed for codon optimization of protein sequences. The core of it based on the mathematical codon optimization proposed by Şen et al. (2020)
Simple Python program to perform codon optimization or heterology calculations.
Calculating AA frequencies from codon design, and vice versa
Taxonomic Identity PREdiction: homework for Machine Learning Course 2021 (MSc Bioinformatics for Computational Genomics)
📊 Codon usage tables in code-friendly format + Python bindings
A tool to translate a given protein sequence into a DNA sequence based on a constructed codon use table for a target heterologous host, Nicotiana benthamiana.
🎯 Generate DNA sequences with specified amino acid, codon, and k-mer frequencies
MATLAB package for codon usage bias and NGS analysis
Add a description, image, and links to the codon-usage topic page so that developers can more easily learn about it.
To associate your repository with the codon-usage topic, visit your repo's landing page and select "manage topics."