tools for genetic genealogy and the analysis of consumer DNA test results

tools for reading, writing, merging, and remapping SNPs

Chromosome polymer simulations and in silico capture experiments

Banding pattern extraction and banding pattern segmentation mask generation for stained banded chromosome images.

A dotplot generator for large chromosomes

A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.

Evolutionary Chromosome Breakpoints Validator

Mapping WikiPathways to chromosomes

Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species

Visualize your DNA segments from gedmatch, ftdna, myheritage, 23andme

The library provides a general genetic algorithm. It is simple, easy to use, and very fast. All you need to do is to define the fitness function and its variables. There are many examples of how to deal with classic genetic algorithms problems.

Simple genetic data analysis for GEDKeeper

HTML widget for displaying IBD segments in an interactive ideogram using Ideogram.js

A plugin to estimate chromosome sizes from karyotype images.

Gexplora - user-interface to analyse genomic elements along chromosomes

Node2Vec and PCA on Hi-C matrices for detecting chromosome translocations.

Assembler for HiC data

🧬Chromosome Visualizations

A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.