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Mar 17, 2017 - R
chromosomes
Here are 27 public repositories matching this topic...
Assembler for HiC data
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Nov 22, 2018 - Python
A Python script that implements a two player strategic game with two chromosomes having length n and m of nucleotides respectively. In each Round of the game a player can destroy one of the chromosomes and split the other into two non-empty parts. The player who deletes the last nucleotide wins.
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Nov 21, 2019 - Python
A Python script that implements a two player strategic game with two sequences of length n and m nucleotides respectively. At each Round of the game a player can remove a random number of nucleotides from one sequence or the same number of nucleotides from both sequences. The player who removes the last nucleotide wins.
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Nov 22, 2019 - Python
A Python script that for a parameter k, calculates the universal alignment of 2 sequences, with limitation that the alignment contains at most k unknown nucleotides. Nucleotide sequences are sometimes written in a 5-character alphabet, A, T, G, C, and N where N stands for an undefined nucleotide.
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Nov 25, 2019 - Python
A python script that implements an efficient algorithm for the Chimeric Alignment problem. A virus infects a bacterium and modifies a replication process in the bacterium by adding for each A an A sequence of length 1-5, for each C a C sequence of length 1-10, for each G a G sequence of length >= 1 and for each T a T sequence of length >= 1.
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Nov 26, 2019 - Python
Machine Learning (ML) research within medicine and healthcare represents one of the most challenging domains for both engineers and medical specialists. One of the most desired tasks to be accomplished using ML applications is represented by disease detection. A good example of such a task is the detection of genetic abnormalities like Down synd…
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Aug 1, 2020 - Python
Gexplora - user-interface to analyse genomic elements along chromosomes
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Nov 15, 2020 - Python
Evolutionary Chromosome Breakpoints Validator
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Dec 9, 2020 - Perl
The library provides a general genetic algorithm. It is simple, easy to use, and very fast. All you need to do is to define the fitness function and its variables. There are many examples of how to deal with classic genetic algorithms problems.
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Apr 19, 2022 - C++
Banding pattern extraction and banding pattern segmentation mask generation for stained banded chromosome images.
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Jun 10, 2022 - Python
A plugin to estimate chromosome sizes from karyotype images.
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Jun 13, 2022 - Python
HTML widget for displaying IBD segments in an interactive ideogram using Ideogram.js
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Sep 26, 2022 - R
Standardized identifiers and OWL classes for chromosomes and chromosomal parts across species
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Feb 19, 2023 - Python
collection of examples / demos for python 'datadraw' package, organized as a flask app
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Mar 17, 2023 - Python
Research work on the search for tRNA-like sequences in the human genome. National Research Nuclear University MEPhI (Moscow Engineering Physics Institute)
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Jul 1, 2023 - C++
Measures the integral radial density of a fluorescent signal in a nucleus of any shape
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Oct 3, 2023 - Python
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