chromatin
Here are 47 public repositories matching this topic...
ChIPseq pipeline for Pasini's lab written in snakemake
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Feb 1, 2024 - Python
Benchmarking simulation frameworks for chromatin folding. (https://resgen.io/l/?d=IBvynlJsQ5qMAvSa9JP3XQ)
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Mar 21, 2024 - Jupyter Notebook
Code to model active loop extrusion on chromatin using hybrid MD-MC.
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May 22, 2024 - C
Multi Resolution Analysis of Tiling Arrays. (R package)
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Mar 9, 2023 - R
Make a phylogeny using the chromatin structure information extracted from Hi-C experiments (mirror of the original repo)
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Sep 9, 2019 - Python
ChIP-seq normalization according to background reads density. (R package)
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Jan 10, 2019 - R
Sample Analysis for diffloop paper
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Sep 23, 2017 - HTML
ChIP-seq pipeline specific for the Zwart lab
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May 27, 2024 - Python
chromhmmData: Chromosome Size, Coordinates and Anchor Files
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Jul 10, 2021
Documenation Chromatin Accessibility Atlas
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Aug 18, 2023 - Jupyter Notebook
Statistical Modeling of ChIA-PET interactions
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Aug 6, 2018 - Shell
This is the code for the chromatin packing model in macrogenomics engineering study
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Oct 24, 2017 - Python
HiSIF: Genome-wide chromatin interactions identify characteristic promoter-distal loops
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Oct 20, 2021 - C++
Workflow for processing single-cell sortChIC data
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Jan 4, 2024 - Python
🖥️📚 WorkflowR site containing code and analyses produced throghout my PhD thesis.
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Sep 3, 2020 - HTML
Using chromatin-chromatin interaction scores generated by the Capture Hi-C technology, I developed this R code during my six week internship in the Spicuglia lab, part of the INSERM institute (TAGC) related to the Aix-Marseille University, France, in order to identify the DNA interactions happening between different regions, specifically the int…
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Mar 5, 2023
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