A full-text article retrieval pipeline for biomedical literature.
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Updated
May 29, 2024 - Python
A full-text article retrieval pipeline for biomedical literature.
Corpus of Online Medical EnTities: the cometA corpus
A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.
GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).
Binary classifier to identify scientific publications reporting pharmacokinetic parameters estimated in vivo
datasets for tissue and tool named entity recognition, annotation files for biological workflow extraction, and disambiguation files
BioNLP Workshop 2023 and Shared Tasks @ ACL 2023
Multimodal Question Answering in the Medical Domain: A summary of Existing Datasets and Systems
BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences
[BioCreative VII] Track 5 - LitCovid track Multi-label topic classification for COVID-19 literature annotation
This code is to run MetaMap in parallel using Python.
MIL-RBERT: A Data-driven Approach for Noise Reduction in Distantly Supervised Biomedical Relation Extraction (BioNLP @ ACL 2020)
This repository automatically requests and extracts abstract from PubMed.
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