Tensorflow implementation of the Convolutional Recurrent Neural Network model with max pooling and attentive pooling, for relation classification on biomedical text.
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Updated
Dec 1, 2017 - Python
Tensorflow implementation of the Convolutional Recurrent Neural Network model with max pooling and attentive pooling, for relation classification on biomedical text.
DDI Extraction from Biomedical text using LSTM network
This repository stands for applying and evaluating HUNER pre-trained model ("disease_all") on "BC5CDR-Disease" data set .
brat rapid annotation tool (brat) - for all your textual annotation needs
Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.
ACL 2018: Hybrid semi-Markov CRF for Neural Sequence Labeling (http://aclweb.org/anthology/P18-2038)
GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).
Text mining tumor antigens for cancer immunotherapy research
Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)
This repository automatically requests and extracts abstract from PubMed.
[BioCreative VII] Track 5 - LitCovid track Multi-label topic classification for COVID-19 literature annotation
A cost-sensitive BERT that handles the class imbalance for the task of biomedical NER.
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