Tensorflow implementation of the Convolutional Recurrent Neural Network model with max pooling and attentive pooling, for relation classification on biomedical text.
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Updated
Dec 1, 2017 - Python
Tensorflow implementation of the Convolutional Recurrent Neural Network model with max pooling and attentive pooling, for relation classification on biomedical text.
DDI Extraction from Biomedical text using LSTM network
GePI (GEne - Protein Interactions) is a web portal for quick and convenient access to gene - protein interaction mentions automatically extracted from the biomedical literature, i.e. PubMed and PubMed Central (Open Access Subset).
Text mining tumor antigens for cancer immunotherapy research
Cross-type Biomedical Named Entity Recognition with Deep Multi-task Learning (Bioinformatics'19)
This repository automatically requests and extracts abstract from PubMed.
BioNLP Workshop 2023 and Shared Tasks @ ACL 2023
This code is to run MetaMap in parallel using Python.
brat rapid annotation tool (brat) - for all your textual annotation needs
Usagi is an application to help create mappings between coding systems and the Vocabulary standard concepts.
ACL 2018: Hybrid semi-Markov CRF for Neural Sequence Labeling (http://aclweb.org/anthology/P18-2038)
This repository contains data and BioBert based NER model monologg/biobert_v1.1_pubmed from community-uploaded Hugging Face models for detecting entities such as chemical and disease.
datasets for tissue and tool named entity recognition, annotation files for biological workflow extraction, and disambiguation files
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