An R package and web app for spatial visualisation of admixture on a projected map
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Updated
May 30, 2024 - R
An R package and web app for spatial visualisation of admixture on a projected map
Rapid population clustering with autoencoders
An R package to analyse and visualise admixture proportions from STRUCTURE, fastSTRUCTURE, TESS, ADMIXTURE etc.
Set of scripts used for the paper "A Neurodegenerative Disease Landscape of Rare Mutations in Colombia Due to Founder Effects"
A Snakemake powered pipeline developed to perform population structure and admixture analysis given multiple Variant Call Format datasets. This has been developed in partial fulfilment of a MSc in Bioinformatics at the University of Pretoria by Graeme Ford.
tips and tricks in genome-wide association studies - a tutorial
Tool to estimate purity of tumor samples exploiting DNA Methylation data
Julia wrapper of the ADMIXTURE program for estimating ancestry
haplotype-based admixture inference and dating software
Miscellaneous scripts that do not really deserve their own repos
faster haplotype-based admixture inference and dating software
Utilities for analyzing next generation sequencing data.
Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
A data clustering package based on admixture ratios (Q matrix) of population structure analysis.
Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files
Tutorial for visualising admixture on a map
Interactive interface for pophelper using shiny web framework.
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