Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
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Updated
Apr 12, 2018 - Python
Python script to generate .snp and .ind Eigenstrat files from a PHYLIP infile
Simulator of secondary CONtact using Fisher's JUNCTION representation of genome admixture.
Random bash scripts for working on the AHPCC cluster and for processing input and output files for various programs
An R package for running ADMIXTOOLS analyses directly within R. See the project website at https://bodkan.net/admixr.
R scripts that use Shiny to render interactive popgen plots
Repository for code used in the study "Patterns of population structure and complex haplotype sharing at continental and local scales in field isolates of the green alga Chlamydomonas reinhardtii"
This repository contains practical data analyses exercises for the special course on Paleogenomics and Anthropology held at the National School of Anthropology of Mexico (ENAH), May 6 to 10, 2019. Topics include performing QC on aDNA NGS data, assigning mtDNA haplogroups and testing hypotheses w/PCA and ADMIXTURE analyses. No previous command-li…
Repo to analyze population genetic data with many different methods
Analysis of transcriptome imputation using paired genotype-expression data from SAGE and GEUVADIS
Combining phylogenetic networks and Random Forests for prediction of ancestry from multilocus genotype data
STRUCTURE and ROLLOFF reimplementations for CS 4775 (Computational Genetics and Genomics)
Interactive interface for pophelper using shiny web framework.
Tutorial for visualising admixture on a map
Python script to add population identifiers to STRUCTURE, PLINK, and PHYLIP files
A data clustering package based on admixture ratios (Q matrix) of population structure analysis.
Comprehensive, detailed and interactive plots for STRUCTURE and ADMIXTURE population analysis
Utilities for analyzing next generation sequencing data.
faster haplotype-based admixture inference and dating software
Miscellaneous scripts that do not really deserve their own repos
haplotype-based admixture inference and dating software
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