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Killed after receive Segmentation fault:SIGSEGV(11) signal #32
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Hello, Sorry for this issue. Teo |
Thank you @tlemane for the response. See attached file. I should mention that a toy example of 3 fastq files from a different source worked well on the same machine. |
Hello, |
Hello
This back trace:
And these error log:
The file TA2703.kmer is there and about the same size of the other kmer files. |
Hello |
running:
kmtricks pipeline --file fof2 --run-dir ./kmer_pa --kmer-size 31 --mode kmer:pa:text -t 10
I get:
running 120 samples, 420 read files (~14GB each) on Ubuntu 22.04, kernel 6.5.0-21-generic, kmtricks version v1.4.0. installed in conda environment. 125GB of RAM, 50BG sawp, 25 CPU. I monitored CPU and RAM using htop and did not see overuse of either CPU or RAM see log file:
Please advise? Thank you
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