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gene expression trends line plots grouped by sample conditions #1191

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qinting opened this issue Apr 22, 2024 · 1 comment
Open

gene expression trends line plots grouped by sample conditions #1191

qinting opened this issue Apr 22, 2024 · 1 comment
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@Marius1311 @WeilerP
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@qinting
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qinting commented Apr 22, 2024

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Hi, I would like to visualize the gene expression trends of a particular lineage between different sample conditions. Is it possible to do it using cr.pl.gene_trends function? Or is there a workaround ? What I can think of is to build the GAMR model for each sample conditions, but I am not sure how to integrate all the line plots in one figure. Thanks!
@qinting qinting added the question Further information is requested label Apr 22, 2024
@Marius1311
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Good question, I don't think we currently support covariates in gene trend plotting (or anywhere in CellRank, to be honest). That's something to think about for the future.

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@qinting @Marius1311 @WeilerP