{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":284328391,"defaultBranch":"master","name":"crystfel","ownerLogin":"taw10","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-08-01T19:47:26.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/25135057?v=4","public":true,"private":false,"isOrgOwned":false},"refInfo":{"name":"","listCacheKey":"v0:1713366304.0","currentOid":""},"activityList":{"items":[{"before":"e26937bd935a1e20e7a5bf6f7a7499052df4f9af","after":"e95b5750c3abaa390dd2655782e2e39bdbd9072a","ref":"refs/heads/master","pushedAt":"2024-06-06T15:11:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"Update tutorial.rst","shortMessageHtmlLink":"Update tutorial.rst"}},{"before":"c5a643628ac10db775237968946e1759b83743fb","after":"e26937bd935a1e20e7a5bf6f7a7499052df4f9af","ref":"refs/heads/master","pushedAt":"2024-06-06T15:01:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"tutorial.rst: Update geometry refinement step\n\nThis was out of date, referring to the old detector-shift which doesn't\nwork any more.\n\nFixes: https://gitlab.desy.de/thomas.white/crystfel/-/issues/97","shortMessageHtmlLink":"tutorial.rst: Update geometry refinement step"}},{"before":"3495dff6d8dc1242b273789466eaa3f17ee6eca7","after":"c5a643628ac10db775237968946e1759b83743fb","ref":"refs/heads/master","pushedAt":"2024-06-04T12:37:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"indexamajig: Add --asapo-acks option","shortMessageHtmlLink":"indexamajig: Add --asapo-acks option"}},{"before":"e2c8dab1f0d6747c79d7e9cd8318695f4e3fff3a","after":"3495dff6d8dc1242b273789466eaa3f17ee6eca7","ref":"refs/heads/master","pushedAt":"2024-05-24T13:48:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"Julia: Set max Mille level correctly\n\nPreviously, there was a missing function argument here.","shortMessageHtmlLink":"Julia: Set max Mille level correctly"}},{"before":"f38099fe25fc0b32a17885a23b43134731541ac2","after":"e2c8dab1f0d6747c79d7e9cd8318695f4e3fff3a","ref":"refs/heads/master","pushedAt":"2024-05-14T12:10:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"compare_reindexed_cell_parameters: Small logic fix\n\nI was trying to be too clever. The old version breaks if the G6\ndistance is exactly zero, which happens e.g. in one of the unit tests.","shortMessageHtmlLink":"compare_reindexed_cell_parameters: Small logic fix"}},{"before":"741ca70b8fae1ca560fa84b7a533efbd7f2ba1de","after":"f38099fe25fc0b32a17885a23b43134731541ac2","ref":"refs/heads/master","pushedAt":"2024-05-14T10:18:46.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"data_template_write_to_fh: Fix output of mask filename","shortMessageHtmlLink":"data_template_write_to_fh: Fix output of mask filename"}},{"before":"c7a602f5d1e1109e341f25bad264a11f2beec9b3","after":"741ca70b8fae1ca560fa84b7a533efbd7f2ba1de","ref":"refs/heads/master","pushedAt":"2024-05-06T15:33:49.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"data_template_write_to_fh: Don't try to write coffset at top level\n\nPreviously, there was a bad bug here. We would still try to write a\ntop-level coffset even if panels have moved such that the coffset is no\nlonger a single value.\n\nOne possibility is to unset panel->cnz_offset_default when moving a\npanel. This works, but we have to do it on every translation, or accept\na floating-point comparison with zero and associated non-determinism.\n\nIt's very likely that if we move one panel, we'll be moving all panels,\neven if only by a small amount. So, a more stable way seems to just\nwrite separate coffset values all the time. The coffset values aren't\nreally meant to be used at the top level anyway (that's what clen is\nfor!), so this fits pretty well.","shortMessageHtmlLink":"data_template_write_to_fh: Don't try to write coffset at top level"}},{"before":"16f4ffd1445c09d9e22e941930686243d1214105","after":"c7a602f5d1e1109e341f25bad264a11f2beec9b3","ref":"refs/heads/master","pushedAt":"2024-05-06T08:33:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"indexamajig: Avoid is_hdf5_file(\"-\", ...)\n\nWith thanks to biochem-fan.\nFixes: https://github.com/taw10/crystfel/issues/12","shortMessageHtmlLink":"indexamajig: Avoid is_hdf5_file(\"-\", ...)"}},{"before":"30d1a5698b4efff71f518bf95f3b09a18c4a1c3b","after":"16f4ffd1445c09d9e22e941930686243d1214105","ref":"refs/heads/master","pushedAt":"2024-05-02T07:33:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"data_template_write_to_fh: Fix bad region output\n\nTwo problems:\n\n1. Didn't take into account that bad->name already includes the prefix\n \"bad\".\n\n2. Didn't convert the panel-relative coordinates back to slab-relative.\n\nFixes: https://github.com/taw10/crystfel/issues/11","shortMessageHtmlLink":"data_template_write_to_fh: Fix bad region output"}},{"before":"aecd2dcd9af71911ce0b2be0ac74c1820c02f3f7","after":"30d1a5698b4efff71f518bf95f3b09a18c4a1c3b","ref":"refs/heads/master","pushedAt":"2024-04-30T16:47:39.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"indexamajig: Reduce ASAP::O verbosity","shortMessageHtmlLink":"indexamajig: Reduce ASAP::O verbosity"}},{"before":"79bda19687e425818888ce17cc6e2239744ee640","after":"aecd2dcd9af71911ce0b2be0ac74c1820c02f3f7","ref":"refs/heads/master","pushedAt":"2024-04-26T14:20:51.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"Further clarification about ordering of panel group directives\n\nSee 79bda19687e425818888ce17cc6e2239744ee640","shortMessageHtmlLink":"Further clarification about ordering of panel group directives"}},{"before":"2325b391a2193d7729a9cb188b66e08588484cce","after":"79bda19687e425818888ce17cc6e2239744ee640","ref":"refs/heads/master","pushedAt":"2024-04-26T12:28:04.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"crystfel_geometry(5): Mention that group definitions must come after panels\n\nAlso mention this when complaining about the geometry file.\n\nFixes: https://github.com/taw10/crystfel/issues/10","shortMessageHtmlLink":"crystfel_geometry(5): Mention that group definitions must come after …"}},{"before":"45796383dfa3a2daccaee2069e644268d1276c1d","after":"2325b391a2193d7729a9cb188b66e08588484cce","ref":"refs/heads/master","pushedAt":"2024-04-25T12:57:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"indexamajig: Avoid writing empty Mille records\n\nFixes: https://github.com/taw10/crystfel/issues/9","shortMessageHtmlLink":"indexamajig: Avoid writing empty Mille records"}},{"before":"d7329d0a207cd17cde5651abd989a66c1b5da82c","after":"45796383dfa3a2daccaee2069e644268d1276c1d","ref":"refs/heads/master","pushedAt":"2024-04-24T15:21:56.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"Julia: Add 'setreflections!' to add a RefList for a Crystal in an image","shortMessageHtmlLink":"Julia: Add 'setreflections!' to add a RefList for a Crystal in an image"}},{"before":"895a493ce36f7fc81232727177145bf3fd2bde63","after":"d7329d0a207cd17cde5651abd989a66c1b5da82c","ref":"refs/heads/master","pushedAt":"2024-04-24T12:08:28.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"indexamajig: Add ASAP::O acknowledgements","shortMessageHtmlLink":"indexamajig: Add ASAP::O acknowledgements"}},{"before":"3438527c657d898f76658b464f018a045861af85","after":"895a493ce36f7fc81232727177145bf3fd2bde63","ref":"refs/heads/master","pushedAt":"2024-04-23T10:03:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"align_detector: Add missing argument in warning message\n\nFixes: https://github.com/taw10/crystfel/issues/8","shortMessageHtmlLink":"align_detector: Add missing argument in warning message"}},{"before":"904bfc512e618e45c36a29a6259aeaac0b09906e","after":"3438527c657d898f76658b464f018a045861af85","ref":"refs/heads/master","pushedAt":"2024-04-22T14:35:47.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"asdf: Force cell to be right-handed after refinement\n\nIn some rare cases, the cell changes from right to left handed during\nthe vector refinement stage of asdf, while ending up at an apparently\ncorrect indexing solution. This commit just flips the axis round when\nnecessary, in the same way that asdf already does in an earlier stage.\n\nI haven't done a proper survey, but I can say that the image I used to\nisolate and test this issue had very low resolution while still being\nwhat we would call \"indexable\". The left-handed cells appeared for six\nout of the 12173 hits in that run, or slightly below 0.05%. So, it's\nrare but not totally impossible.","shortMessageHtmlLink":"asdf: Force cell to be right-handed after refinement"}},{"before":"3274d3d3152d60d7c1f425d2da649e9c2c37d99e","after":"904bfc512e618e45c36a29a6259aeaac0b09906e","ref":"refs/heads/master","pushedAt":"2024-04-22T08:31:59.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"Minor documentation tweaks","shortMessageHtmlLink":"Minor documentation tweaks"}},{"before":"f62eedb0630d16ea807df6320d0197f5875b8483","after":"3274d3d3152d60d7c1f425d2da649e9c2c37d99e","ref":"refs/heads/master","pushedAt":"2024-04-19T14:26:33.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"CI: Better way of restricting build-centos7 to mainline only","shortMessageHtmlLink":"CI: Better way of restricting build-centos7 to mainline only"}},{"before":"52bde38abbcb53d163355a71fc9e99332ffe3dee","after":"f62eedb0630d16ea807df6320d0197f5875b8483","ref":"refs/heads/master","pushedAt":"2024-04-19T14:14:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"CI: Run build-centos7 only for \"main\" project (not for e.g. MRs)","shortMessageHtmlLink":"CI: Run build-centos7 only for \"main\" project (not for e.g. MRs)"}},{"before":"536d1a563e5c93cbbefb3556ea897acaf8fa70ce","after":"52bde38abbcb53d163355a71fc9e99332ffe3dee","ref":"refs/heads/master","pushedAt":"2024-04-18T13:37:41.000Z","pushType":"push","commitsCount":153,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"Merge branch 'julia'","shortMessageHtmlLink":"Merge branch 'julia'"}},{"before":"d4cddfdba38cb852ded3ea015057c06951903b33","after":"536d1a563e5c93cbbefb3556ea897acaf8fa70ce","ref":"refs/heads/master","pushedAt":"2024-04-18T11:54:59.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"Address pipeline performance improvement changes which Tom requested.\n1) Remove MacOS native build job and build-brew-macos the only job for MacOS.\n2) Make container builds manual.","shortMessageHtmlLink":"Address pipeline performance improvement changes which Tom requested."}},{"before":"b31bcbc0b0017a82b95568d9393e57e37e835ebd","after":"d4cddfdba38cb852ded3ea015057c06951903b33","ref":"refs/heads/master","pushedAt":"2024-04-17T15:04:44.000Z","pushType":"push","commitsCount":8,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"CONTRIBUTING.md: Fix DOI link","shortMessageHtmlLink":"CONTRIBUTING.md: Fix DOI link"}},{"before":"489a4fdea07098dadd21c2454dc3887c1b893234","after":"b31bcbc0b0017a82b95568d9393e57e37e835ebd","ref":"refs/heads/master","pushedAt":"2024-04-16T15:55:38.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"Update INSTALL.md","shortMessageHtmlLink":"Update INSTALL.md"}},{"before":"00074756771a123f29ad84a10923b524e4924171","after":"489a4fdea07098dadd21c2454dc3887c1b893234","ref":"refs/heads/master","pushedAt":"2024-04-16T14:58:30.000Z","pushType":"push","commitsCount":3,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"ASAP::O: Do not free image->data_block until we get the callback","shortMessageHtmlLink":"ASAP::O: Do not free image->data_block until we get the callback"}},{"before":"3a62ae8eb067baacc12bb23404211275c3ed3d38","after":"00074756771a123f29ad84a10923b524e4924171","ref":"refs/heads/master","pushedAt":"2024-02-20T15:35:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"Set default flag for panel dimensions\n\nThis was missed out, causing DataTemplates to be written incorrectly.","shortMessageHtmlLink":"Set default flag for panel dimensions"}},{"before":"bd074de22d95a3e9acf131a0829df36404eb2361","after":"3a62ae8eb067baacc12bb23404211275c3ed3d38","ref":"refs/heads/master","pushedAt":"2024-02-19T09:05:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"Draw attention to the need for separate Mille dirs for cluster jobs","shortMessageHtmlLink":"Draw attention to the need for separate Mille dirs for cluster jobs"}},{"before":"109af31d26376626256ce1272a2c04738342ff11","after":"bd074de22d95a3e9acf131a0829df36404eb2361","ref":"refs/heads/master","pushedAt":"2024-02-16T11:24:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"CI: Remove Python installation for MacOS\n\nWe don't have any direct Python dependency, and for some reason this is\nbreaking the CI. So, let's just get rid of it.","shortMessageHtmlLink":"CI: Remove Python installation for MacOS"}},{"before":"2af8545279f24ba916553621016502a04a39337d","after":"109af31d26376626256ce1272a2c04738342ff11","ref":"refs/heads/master","pushedAt":"2024-02-16T10:47:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"align_detector: Add 'closeandreopen' option for Millepede\n\nWith large indexing jobs, we generate a LOT (4000+) of Millepede files.\nThis option is needed to prevent pede from keeping all these files open\nsimultaneously, which runs into an operating system limit.","shortMessageHtmlLink":"align_detector: Add 'closeandreopen' option for Millepede"}},{"before":"f3b25d69e888cb66e6a2add491a4f6d5e18f30af","after":"2af8545279f24ba916553621016502a04a39337d","ref":"refs/heads/master","pushedAt":"2024-02-15T11:56:25.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"taw10","name":"Thomas White","path":"/taw10","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/25135057?s=80&v=4"},"commit":{"message":"GUI: Find all Mille folders for alignment task\n\nDepending on the backend, this could be a single \"mille-data\", or\nmultiple \"mille-data-X\" folders.","shortMessageHtmlLink":"GUI: Find all Mille folders for alignment task"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEXlY-_AA","startCursor":null,"endCursor":null}},"title":"Activity · taw10/crystfel"}