{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":641579571,"defaultBranch":"main","name":"sbx_virus_id","ownerLogin":"sunbeam-labs","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2023-05-16T19:13:21.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/29779589?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1710254289.0","currentOid":""},"activityList":{"items":[{"before":"b8742a9f10778fa160bb1479d6519a23fa6fd022","after":"ba2e2e92b91e421ff052acd173de6ddf2f9dde76","ref":"refs/heads/8-improve-summary-rules","pushedAt":"2024-03-12T19:27:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Include annotation","shortMessageHtmlLink":"Include annotation"}},{"before":"2ceb577e0fb9de80b8e6334965b0b244f709f919","after":"b8742a9f10778fa160bb1479d6519a23fa6fd022","ref":"refs/heads/8-improve-summary-rules","pushedAt":"2024-03-12T19:06:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Fix blast parsing","shortMessageHtmlLink":"Fix blast parsing"}},{"before":"d4ba86f8f46c206691c25ef901052db46b22785b","after":"2ceb577e0fb9de80b8e6334965b0b244f709f919","ref":"refs/heads/8-improve-summary-rules","pushedAt":"2024-03-12T15:35:24.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Proper btf parsing","shortMessageHtmlLink":"Proper btf parsing"}},{"before":"848d353db858b476d151d3b4c1c8e430dfab4cc0","after":"d4ba86f8f46c206691c25ef901052db46b22785b","ref":"refs/heads/8-improve-summary-rules","pushedAt":"2024-03-12T15:21:52.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Add coverage per gene report","shortMessageHtmlLink":"Add coverage per gene report"}},{"before":null,"after":"848d353db858b476d151d3b4c1c8e430dfab4cc0","ref":"refs/heads/8-improve-summary-rules","pushedAt":"2024-03-12T14:38:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Include sbx_assembly in release tests","shortMessageHtmlLink":"Include sbx_assembly in release tests"}},{"before":"7fb64a0b168d1c899bcb49242025c799dfc3566b","after":"848d353db858b476d151d3b4c1c8e430dfab4cc0","ref":"refs/heads/main","pushedAt":"2024-03-04T18:49:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Include sbx_assembly in release tests","shortMessageHtmlLink":"Include sbx_assembly in release tests"}},{"before":"e4aacf8b5ac539e14bc12ba2d6f6c6fd90be3abb","after":"7fb64a0b168d1c899bcb49242025c799dfc3566b","ref":"refs/heads/main","pushedAt":"2024-03-04T18:26:14.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Fix docker workflow and bump to version 0.0.1","shortMessageHtmlLink":"Fix docker workflow and bump to version 0.0.1"}},{"before":"06906657da5e25184e735051def447f49871879b","after":"e4aacf8b5ac539e14bc12ba2d6f6c6fd90be3abb","ref":"refs/heads/main","pushedAt":"2024-03-04T18:12:17.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Update docker tags in workflow","shortMessageHtmlLink":"Update docker tags in workflow"}},{"before":"a9bdc7388b626e3c57aacbdf824ab29eebfedfb3","after":null,"ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-03-04T17:45:22.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"}},{"before":"89da98c4c9098b462abf40fd8d74e6671ef53918","after":"06906657da5e25184e735051def447f49871879b","ref":"refs/heads/main","pushedAt":"2024-03-04T17:45:10.000Z","pushType":"pr_merge","commitsCount":11,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Merge pull request #7 from sunbeam-labs/5-containerize-and-version\n\n5-containerize-and-version","shortMessageHtmlLink":"Merge pull request #7 from sunbeam-labs/5-containerize-and-version"}},{"before":"6664ca80bc779c6a437312500e6187d31b955f8b","after":"a9bdc7388b626e3c57aacbdf824ab29eebfedfb3","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-03-01T21:10:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Logs and stats will never stop being annoying","shortMessageHtmlLink":"Logs and stats will never stop being annoying"}},{"before":"7fdf118ad9b9b8bb7590d1582960618c314e3ed6","after":"6664ca80bc779c6a437312500e6187d31b955f8b","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-03-01T21:07:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Requires sbx_assembly to run","shortMessageHtmlLink":"Requires sbx_assembly to run"}},{"before":"d320b21cac61ccaccce7b53799bb9672a4b63cac","after":"7fdf118ad9b9b8bb7590d1582960618c314e3ed6","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-03-01T21:00:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Fix cenote commands","shortMessageHtmlLink":"Fix cenote commands"}},{"before":"83000bc7c4ea65c9c6989a2b2c9f0cadc5af02ba","after":"d320b21cac61ccaccce7b53799bb9672a4b63cac","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-03-01T20:20:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Update cenote taker commands to v3","shortMessageHtmlLink":"Update cenote taker commands to v3"}},{"before":"745466a8eaf70e73aeb23b0c4cd62cbc963e5d65","after":"83000bc7c4ea65c9c6989a2b2c9f0cadc5af02ba","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-03-01T19:56:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Fix typo","shortMessageHtmlLink":"Fix typo"}},{"before":"0015f620aea74917c3b0780c4b26709661ebbb44","after":"745466a8eaf70e73aeb23b0c4cd62cbc963e5d65","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-03-01T15:52:07.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Add test reads","shortMessageHtmlLink":"Add test reads"}},{"before":"02748eb2dfaafd873b8b0d78ff3e573bf4dbec42","after":"0015f620aea74917c3b0780c4b26709661ebbb44","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-03-01T15:07:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Add dry run tests","shortMessageHtmlLink":"Add dry run tests"}},{"before":"5cf7a5715bd46309f2d4f438bf6314c7e2192e9b","after":"02748eb2dfaafd873b8b0d78ff3e573bf4dbec42","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-02-29T19:36:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Reformat","shortMessageHtmlLink":"Reformat"}},{"before":"fcb04351ace6229479bdeb7d38d7bd4626c23d0e","after":"5cf7a5715bd46309f2d4f438bf6314c7e2192e9b","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-02-29T19:35:44.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Update tests workflow trigger","shortMessageHtmlLink":"Update tests workflow trigger"}},{"before":"89da98c4c9098b462abf40fd8d74e6671ef53918","after":"fcb04351ace6229479bdeb7d38d7bd4626c23d0e","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-02-29T19:33:09.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Init containerized","shortMessageHtmlLink":"Init containerized"}},{"before":null,"after":"89da98c4c9098b462abf40fd8d74e6671ef53918","ref":"refs/heads/5-containerize-and-version","pushedAt":"2024-02-28T03:57:16.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Depends on megahit from sbx_assembly and remove host_decontam_Q (run filter empty)","shortMessageHtmlLink":"Depends on megahit from sbx_assembly and remove host_decontam_Q (run …"}},{"before":"5983c37352034478df987c80c18765952c173bb0","after":"89da98c4c9098b462abf40fd8d74e6671ef53918","ref":"refs/heads/main","pushedAt":"2024-01-05T17:34:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Depends on megahit from sbx_assembly and remove host_decontam_Q (run filter empty)","shortMessageHtmlLink":"Depends on megahit from sbx_assembly and remove host_decontam_Q (run …"}},{"before":"93f40d5c8a8cf1ab4ea69e6e60725fc6c54efea8","after":"5983c37352034478df987c80c18765952c173bb0","ref":"refs/heads/main","pushedAt":"2023-11-16T17:17:47.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"AHHH","shortMessageHtmlLink":"AHHH"}},{"before":"b49fa120a2a20b79f6080a19b21221ea5887b321","after":"93f40d5c8a8cf1ab4ea69e6e60725fc6c54efea8","ref":"refs/heads/main","pushedAt":"2023-11-16T17:16:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Fix second occurence of f-strings","shortMessageHtmlLink":"Fix second occurence of f-strings"}},{"before":"de44704f4080b96e135cfeb8501ae5cf12737208","after":"b49fa120a2a20b79f6080a19b21221ea5887b321","ref":"refs/heads/main","pushedAt":"2023-11-16T16:52:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Fix f-string issues with snakemake in python 3.12","shortMessageHtmlLink":"Fix f-string issues with snakemake in python 3.12"}},{"before":null,"after":"de44704f4080b96e135cfeb8501ae5cf12737208","ref":"refs/heads/1-add-blastn-rule-for-virsorter-output","pushedAt":"2023-11-08T16:09:39.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Update README","shortMessageHtmlLink":"Update README"}},{"before":"0b3c32a577497c43919579213f35876413704986","after":"de44704f4080b96e135cfeb8501ae5cf12737208","ref":"refs/heads/main","pushedAt":"2023-11-06T18:17:00.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Update README","shortMessageHtmlLink":"Update README"}},{"before":"b416dce3d9f90373ed9ca49d15e3fc8e322c3194","after":"0b3c32a577497c43919579213f35876413704986","ref":"refs/heads/main","pushedAt":"2023-11-02T15:06:43.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Update virsorter resources","shortMessageHtmlLink":"Update virsorter resources"}},{"before":"92ef6b93467ed10eb27283d9e3fb091c3ba8bbb3","after":"b416dce3d9f90373ed9ca49d15e3fc8e322c3194","ref":"refs/heads/main","pushedAt":"2023-10-26T16:44:29.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Add r_env for running Rscript","shortMessageHtmlLink":"Add r_env for running Rscript"}},{"before":"3049472c49a876370f7ce16d2421227843a98c69","after":"92ef6b93467ed10eb27283d9e3fb091c3ba8bbb3","ref":"refs/heads/main","pushedAt":"2023-10-23T15:16:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Add --db-dir to virsorter run","shortMessageHtmlLink":"Add --db-dir to virsorter run"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEE8MztwA","startCursor":null,"endCursor":null}},"title":"Activity · sunbeam-labs/sbx_virus_id"}