{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":238962101,"defaultBranch":"master","name":"sbx_demic","ownerLogin":"sunbeam-labs","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2020-02-07T15:48:09.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/29779589?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1707421973.0","currentOid":""},"activityList":{"items":[{"before":"9bd65952d43b997de736af6322ea0704519acff3","after":"4b4997b737605644b234c676e35138e8cfd1b79e","ref":"refs/heads/clean-up","pushedAt":"2024-02-08T21:42:45.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Remove multi logs","shortMessageHtmlLink":"Remove multi logs"}},{"before":null,"after":"9bd65952d43b997de736af6322ea0704519acff3","ref":"refs/heads/clean-up","pushedAt":"2024-02-08T19:52:53.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Update linting and tests","shortMessageHtmlLink":"Update linting and tests"}},{"before":"e441906cbb8fbc70391a564cf51e2eda8d788d66","after":"f014dc3171d83c1fb172e7f33298598f59c8aa0b","ref":"refs/heads/8-allow-for-reference-genomes","pushedAt":"2024-02-08T19:48:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Add coverage plots from samtools","shortMessageHtmlLink":"Add coverage plots from samtools"}},{"before":"43799ae516219c3ec82ab3ceebc6721339b90e67","after":"e441906cbb8fbc70391a564cf51e2eda8d788d66","ref":"refs/heads/8-allow-for-reference-genomes","pushedAt":"2024-02-05T19:40:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Working DAG with proper grouping (fixed to 001 for now)","shortMessageHtmlLink":"Working DAG with proper grouping (fixed to 001 for now)"}},{"before":"eb496ba3c2fa95f4c6b20538d24e72a96749b0e5","after":"43799ae516219c3ec82ab3ceebc6721339b90e67","ref":"refs/heads/8-allow-for-reference-genomes","pushedAt":"2024-02-04T15:46:39.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Try with OPERA-MS, can't install","shortMessageHtmlLink":"Try with OPERA-MS, can't install"}},{"before":"d1def8b0d47be49ff729dc689551c2a09a7bea82","after":"eb496ba3c2fa95f4c6b20538d24e72a96749b0e5","ref":"refs/heads/8-allow-for-reference-genomes","pushedAt":"2024-02-02T21:56:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Ignore OPERA-MS dir","shortMessageHtmlLink":"Ignore OPERA-MS dir"}},{"before":"10f60f221d664f170409e08d6ced1aeb7a7ad50a","after":"d1def8b0d47be49ff729dc689551c2a09a7bea82","ref":"refs/heads/8-allow-for-reference-genomes","pushedAt":"2024-02-02T21:05:06.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Bring up to date and add sbx_demic_ref skeleton","shortMessageHtmlLink":"Bring up to date and add sbx_demic_ref skeleton"}},{"before":"c44a01bac5670354b775e912c06d20066c7bad5e","after":"52087eb343c5961166c746991abb3c4c5a411542","ref":"refs/heads/12-improve-test-data","pushedAt":"2024-02-02T20:59:54.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Split dense contigs","shortMessageHtmlLink":"Split dense contigs"}},{"before":"52791c00a53a0fb0a604379b652e61d5a189252e","after":"c44a01bac5670354b775e912c06d20066c7bad5e","ref":"refs/heads/12-improve-test-data","pushedAt":"2024-02-02T20:56:41.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Messy work on read sims","shortMessageHtmlLink":"Messy work on read sims"}},{"before":"10f60f221d664f170409e08d6ced1aeb7a7ad50a","after":"52791c00a53a0fb0a604379b652e61d5a189252e","ref":"refs/heads/12-improve-test-data","pushedAt":"2024-01-13T02:58:18.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Major changes, add coverage and contig splitter (not working)","shortMessageHtmlLink":"Major changes, add coverage and contig splitter (not working)"}},{"before":null,"after":"10f60f221d664f170409e08d6ced1aeb7a7ad50a","ref":"refs/heads/12-improve-test-data","pushedAt":"2024-01-11T21:13:50.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Merge pull request #10 from sunbeam-labs/6-use-pycov3-instead-of-demicpl\n\nSwitch from demic.pl to pycov3","shortMessageHtmlLink":"Merge pull request #10 from sunbeam-labs/6-use-pycov3-instead-of-demicpl"}},{"before":null,"after":"10f60f221d664f170409e08d6ced1aeb7a7ad50a","ref":"refs/heads/8-allow-for-reference-genomes","pushedAt":"2024-01-08T15:28:09.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Merge pull request #10 from sunbeam-labs/6-use-pycov3-instead-of-demicpl\n\nSwitch from demic.pl to pycov3","shortMessageHtmlLink":"Merge pull request #10 from sunbeam-labs/6-use-pycov3-instead-of-demicpl"}},{"before":"6d4dfc59f2cad441d031211e3e96714d7b378a92","after":null,"ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2024-01-08T15:24:43.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"}},{"before":"f309f7c34369aa553a90e2a1388713ac5450e4c2","after":"10f60f221d664f170409e08d6ced1aeb7a7ad50a","ref":"refs/heads/master","pushedAt":"2024-01-08T15:24:37.000Z","pushType":"pr_merge","commitsCount":36,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Merge pull request #10 from sunbeam-labs/6-use-pycov3-instead-of-demicpl\n\nSwitch from demic.pl to pycov3","shortMessageHtmlLink":"Merge pull request #10 from sunbeam-labs/6-use-pycov3-instead-of-demicpl"}},{"before":"cf6fd778835d1e98b5bcc4b7b63700a3436142a8","after":"6d4dfc59f2cad441d031211e3e96714d7b378a92","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2024-01-08T15:24:26.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Reformat","shortMessageHtmlLink":"Reformat"}},{"before":"6fa4f3da44bc4668b61952550ea6b5699751fda6","after":"cf6fd778835d1e98b5bcc4b7b63700a3436142a8","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2024-01-08T15:20:17.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Revert breaking changes","shortMessageHtmlLink":"Revert breaking changes"}},{"before":"2aaf573e15d2e38383de56d88c4cabd2a7159633","after":"6fa4f3da44bc4668b61952550ea6b5699751fda6","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2024-01-03T18:47:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Bring back good changes for demic_bio_env, whoops","shortMessageHtmlLink":"Bring back good changes for demic_bio_env, whoops"}},{"before":"9be685b8117404a3cc4c5ddaf140d21a41c2bd2f","after":"2aaf573e15d2e38383de56d88c4cabd2a7159633","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2024-01-03T18:46:27.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Use remotes instead of devtools for github_install and fix megahit on WSL FIFO issue","shortMessageHtmlLink":"Use remotes instead of devtools for github_install and fix megahit on…"}},{"before":"ea61cbdaa740267f79346ca7016ae1f389162876","after":"9be685b8117404a3cc4c5ddaf140d21a41c2bd2f","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2024-01-02T20:48:16.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Reformat","shortMessageHtmlLink":"Reformat"}},{"before":"e86e910448a55f91ac0733a2b5d1ae49ba72c2c8","after":"ea61cbdaa740267f79346ca7016ae1f389162876","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2024-01-02T20:21:50.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Don't check values, just order","shortMessageHtmlLink":"Don't check values, just order"}},{"before":"74a0ddd2b86074389348e99a671bbe6e34009c8a","after":"e86e910448a55f91ac0733a2b5d1ae49ba72c2c8","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2024-01-02T19:57:02.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Fix tests","shortMessageHtmlLink":"Fix tests"}},{"before":"9fbfe87ac6b8c3a01921d6002074d7c42197dff5","after":"74a0ddd2b86074389348e99a671bbe6e34009c8a","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2024-01-02T18:58:13.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Try to get right MaxBin version","shortMessageHtmlLink":"Try to get right MaxBin version"}},{"before":"31e484307f2e7c8dd7672c9396113d9e4dca7837","after":"9fbfe87ac6b8c3a01921d6002074d7c42197dff5","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2023-12-27T17:44:58.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Remove vendor","shortMessageHtmlLink":"Remove vendor"}},{"before":"7d18b7142a557fab13fe4096b714940f077d6440","after":"31e484307f2e7c8dd7672c9396113d9e4dca7837","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2023-12-27T17:37:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Fix missed merge conflict","shortMessageHtmlLink":"Fix missed merge conflict"}},{"before":"2a178b506f8942537cc5daabe1e7701c9889bfa9","after":"7d18b7142a557fab13fe4096b714940f077d6440","ref":"refs/heads/6-use-pycov3-instead-of-demicpl","pushedAt":"2023-12-27T17:33:33.000Z","pushType":"push","commitsCount":13,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Merge changes","shortMessageHtmlLink":"Merge changes"}},{"before":"3b15c92b58b344f971eee5450d8fad0a6fa213a5","after":null,"ref":"refs/heads/update-tests","pushedAt":"2023-12-27T17:26:32.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"}},{"before":"231a8d6ff0a0bad1a348bb39596a2939854d05db","after":"f309f7c34369aa553a90e2a1388713ac5450e4c2","ref":"refs/heads/master","pushedAt":"2023-12-27T17:26:29.000Z","pushType":"pr_merge","commitsCount":12,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Merge pull request #11 from sunbeam-labs/update-tests\n\nUpdate tests and remove unnecessary files","shortMessageHtmlLink":"Merge pull request #11 from sunbeam-labs/update-tests"}},{"before":"a0dcce4f1aba34b7e75cd071035cdb0ba80fcd79","after":"3b15c92b58b344f971eee5450d8fad0a6fa213a5","ref":"refs/heads/update-tests","pushedAt":"2023-12-21T14:54:08.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Whoops","shortMessageHtmlLink":"Whoops"}},{"before":"d5b8e6e536596dbfa90d93057aae59f4984b1495","after":"a0dcce4f1aba34b7e75cd071035cdb0ba80fcd79","ref":"refs/heads/update-tests","pushedAt":"2023-12-21T14:50:37.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Fix colnames","shortMessageHtmlLink":"Fix colnames"}},{"before":"455acecc5e225149c34354c336b220de6b9f0cee","after":"d5b8e6e536596dbfa90d93057aae59f4984b1495","ref":"refs/heads/update-tests","pushedAt":"2023-12-21T14:27:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"Ulthran","name":"Charlie","path":"/Ulthran","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/14882396?s=80&v=4"},"commit":{"message":"Use DEMIC branch","shortMessageHtmlLink":"Use DEMIC branch"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAD9fcQjAA","startCursor":null,"endCursor":null}},"title":"Activity · sunbeam-labs/sbx_demic"}