Sequence Similarity Network Generation

[AntoniaFeilden]

Expected Behavior

Is there a workflow for Sequence Similarity Network generation? Ideally, I would like to automate the generation of interactive ones to visualise protein similarity to allow users to explore them. Aiming to use NetworkX, Leidanlag and Gephi.

Current Behavior

Steps to Reproduce (for bugs)

Please make sure to execute the reproduction steps with newly recreated and empty tmp folders.

MMseqs Output (for bugs)

Please make sure to also post the complete output of MMseqs. You can use gist.github.com for large output.

Context

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Your Environment

Include as many relevant details about the environment you experienced the bug in.

• Git commit used (The string after "MMseqs Version:" when you execute MMseqs without any parameters):
• Which MMseqs version was used (Statically-compiled, self-compiled, Homebrew, etc.):
• For self-compiled and Homebrew: Compiler and Cmake versions used and their invocation:
• Server specifications (especially CPU support for AVX2/SSE and amount of system memory):
• Operating system and version: