{"payload":{"feedbackUrl":"https://github.com/orgs/community/discussions/53140","repo":{"id":228294373,"defaultBranch":"master","name":"abismal","ownerLogin":"smithlabcode","currentUserCanPush":false,"isFork":false,"isEmpty":false,"createdAt":"2019-12-16T03:23:35.000Z","ownerAvatar":"https://avatars.githubusercontent.com/u/7265986?v=4","public":true,"private":false,"isOrgOwned":true},"refInfo":{"name":"","listCacheKey":"v0:1713279543.0","currentOid":""},"activityList":{"items":[{"before":"2ea886dbbb99eb43ed93c6f245b15ffdd89aad00","after":null,"ref":"refs/heads/deleting-original-makefiles","pushedAt":"2024-04-16T14:59:03.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"}},{"before":"df2dcc6c4ee6431c44ed27f8167be3398d3a214c","after":"dab14e3de27c3656d38812c9596225e2b9e94caf","ref":"refs/heads/master","pushedAt":"2024-04-16T14:59:00.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Merge pull request #51 from smithlabcode/deleting-original-makefiles\n\nRemoving original Makefiles","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2246253572\" data-permission-text=\"Title is private\" data-url=\"https://github.com/smithlabcode/abismal/issues/51\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/smithlabcode/abismal/pull/51/hovercard\" href=\"https://github.com/smithlabcode/abismal/pull/51\">#51</a> from smithlabcode/deleting-original-makefiles"}},{"before":null,"after":"2ea886dbbb99eb43ed93c6f245b15ffdd89aad00","ref":"refs/heads/deleting-original-makefiles","pushedAt":"2024-04-16T14:47:46.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"removing the Makefiles that are not generated using configure.ac and Makefile.am","shortMessageHtmlLink":"removing the Makefiles that are not generated using configure.ac and …"}},{"before":"e2147c07bd62dbfb3b1cb612228be308a91082bc","after":null,"ref":"refs/heads/issue-templates","pushedAt":"2024-04-07T03:43:57.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"}},{"before":"810a93bb1b2eaa6494a66a3e1ad5f6cb4689e83e","after":"df2dcc6c4ee6431c44ed27f8167be3398d3a214c","ref":"refs/heads/master","pushedAt":"2024-04-07T03:43:54.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Merge pull request #50 from smithlabcode/issue-templates\n\nAdding issue templates","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"2229543276\" data-permission-text=\"Title is private\" data-url=\"https://github.com/smithlabcode/abismal/issues/50\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/smithlabcode/abismal/pull/50/hovercard\" href=\"https://github.com/smithlabcode/abismal/pull/50\">#50</a> from smithlabcode/issue-templates"}},{"before":null,"after":"e2147c07bd62dbfb3b1cb612228be308a91082bc","ref":"refs/heads/issue-templates","pushedAt":"2024-04-07T03:35:00.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Adding issue templates","shortMessageHtmlLink":"Adding issue templates"}},{"before":"94377ca66d1170339c35e7115da2be392e6919cc","after":null,"ref":"refs/heads/andrewdavidsmith-patch-1","pushedAt":"2024-04-07T03:09:53.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"}},{"before":"5e5541df9e1658965d29f8837d5e5f7a8329f414","after":"810a93bb1b2eaa6494a66a3e1ad5f6cb4689e83e","ref":"refs/heads/master","pushedAt":"2024-04-07T03:09:49.000Z","pushType":"pr_merge","commitsCount":7,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Trying to find a macos config that works without using apple linker","shortMessageHtmlLink":"Trying to find a macos config that works without using apple linker"}},{"before":"4412682e4e9458999412b5cda573f370ba2a7587","after":"94377ca66d1170339c35e7115da2be392e6919cc","ref":"refs/heads/andrewdavidsmith-patch-1","pushedAt":"2024-04-07T02:54:21.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Trying to find a macos config that works without using apple linker","shortMessageHtmlLink":"Trying to find a macos config that works without using apple linker"}},{"before":"32b36e07949e6334b592b576aeb61d2bf14202bf","after":"4412682e4e9458999412b5cda573f370ba2a7587","ref":"refs/heads/andrewdavidsmith-patch-1","pushedAt":"2024-04-07T02:43:47.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Removing the check for macos","shortMessageHtmlLink":"Removing the check for macos"}},{"before":"938712e3bca9e72a60542ccaee21a142e8ad234f","after":"32b36e07949e6334b592b576aeb61d2bf14202bf","ref":"refs/heads/andrewdavidsmith-patch-1","pushedAt":"2024-04-07T02:38:40.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Another attempt at adding directives to check for ARM for Apple M1 and remove the prefetch intrinsic","shortMessageHtmlLink":"Another attempt at adding directives to check for ARM for Apple M1 an…"}},{"before":"d23679d20cb485846e1e9b4d0657286de97ec030","after":"938712e3bca9e72a60542ccaee21a142e8ad234f","ref":"refs/heads/andrewdavidsmith-patch-1","pushedAt":"2024-04-07T02:25:25.000Z","pushType":"push","commitsCount":2,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Merge branch 'andrewdavidsmith-patch-1' of github.com:smithlabcode/abismal into andrewdavidsmith-patch-1","shortMessageHtmlLink":"Merge branch 'andrewdavidsmith-patch-1' of github.com:smithlabcode/ab…"}},{"before":"7994f4c195ab4a4604b8e2e64f704e1239dd44c8","after":"d23679d20cb485846e1e9b4d0657286de97ec030","ref":"refs/heads/andrewdavidsmith-patch-1","pushedAt":"2024-04-07T02:12:31.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Update to g++-13","shortMessageHtmlLink":"Update to g++-13"}},{"before":null,"after":"7994f4c195ab4a4604b8e2e64f704e1239dd44c8","ref":"refs/heads/andrewdavidsmith-patch-1","pushedAt":"2024-04-05T20:56:22.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Update macos-builds.yml","shortMessageHtmlLink":"Update macos-builds.yml"}},{"before":"41a1fd67bb799b20bc5ce67ed791b2cf7d37a636","after":"5e5541df9e1658965d29f8837d5e5f7a8329f414","ref":"refs/heads/master","pushedAt":"2023-12-18T23:10:57.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"configure.ac and Makefile.am: fixing inconsistencies in the short optimizations cli parameters for configure","shortMessageHtmlLink":"configure.ac and Makefile.am: fixing inconsistencies in the short opt…"}},{"before":"8bc3d7ed766ad32fa5028b38615f6b5d5d976bd4","after":null,"ref":"refs/heads/min-read-length-fix","pushedAt":"2023-12-10T19:45:25.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"}},{"before":"0ea1791f5a34f216cb63647ccc3b5225a41f1cd7","after":"41a1fd67bb799b20bc5ce67ed791b2cf7d37a636","ref":"refs/heads/master","pushedAt":"2023-12-10T19:45:21.000Z","pushType":"pr_merge","commitsCount":6,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Update ubuntu-builds.yml\n\nUpdating apt before trying to install dependencies","shortMessageHtmlLink":"Update ubuntu-builds.yml"}},{"before":"6cea08699f936d45a359aa14be666c5864318be0","after":"8bc3d7ed766ad32fa5028b38615f6b5d5d976bd4","ref":"refs/heads/min-read-length-fix","pushedAt":"2023-12-10T19:41:11.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Update ubuntu-builds.yml\n\nUpdating apt before trying to install dependencies","shortMessageHtmlLink":"Update ubuntu-builds.yml"}},{"before":"3988bb29dc0b6d3cff9732c655897449b0476d73","after":"6cea08699f936d45a359aa14be666c5864318be0","ref":"refs/heads/min-read-length-fix","pushedAt":"2023-12-10T19:31:59.000Z","pushType":"push","commitsCount":1,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Update ubuntu-builds.yml\n\nUpdating checkout to v4","shortMessageHtmlLink":"Update ubuntu-builds.yml"}},{"before":null,"after":"3988bb29dc0b6d3cff9732c655897449b0476d73","ref":"refs/heads/min-read-length-fix","pushedAt":"2023-12-10T04:18:22.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"AbismalIndex.hpp: if the user asks for optimizations for very short reads then a compile variable is used to set the window_size to 12 instead of 20. This will be slower for long reads, but much more accurate for reads under 46 bases","shortMessageHtmlLink":"AbismalIndex.hpp: if the user asks for optimizations for very short r…"}},{"before":"6219ae7566b1c89ec4fa6c2e5cddfa32a78ac5a2","after":null,"ref":"refs/heads/update-smithlab-cpp","pushedAt":"2023-10-27T19:38:45.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"masarunakajima","name":"Masaru Nakajima","path":"/masarunakajima","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42074889?s=80&v=4"}},{"before":"0bc1b192853a285cf471be905f37194ab40fc157","after":"0ea1791f5a34f216cb63647ccc3b5225a41f1cd7","ref":"refs/heads/master","pushedAt":"2023-10-27T19:38:42.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"masarunakajima","name":"Masaru Nakajima","path":"/masarunakajima","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/42074889?s=80&v=4"},"commit":{"message":"Merge pull request #46 from smithlabcode/update-smithlab-cpp\n\nUpdate submodules","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1966076970\" data-permission-text=\"Title is private\" data-url=\"https://github.com/smithlabcode/abismal/issues/46\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/smithlabcode/abismal/pull/46/hovercard\" href=\"https://github.com/smithlabcode/abismal/pull/46\">#46</a> from smithlabcode/update-smithlab-cpp"}},{"before":null,"after":"6219ae7566b1c89ec4fa6c2e5cddfa32a78ac5a2","ref":"refs/heads/update-smithlab-cpp","pushedAt":"2023-10-27T19:26:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"updating smithlab_cpp submodule for minor change to progress bar","shortMessageHtmlLink":"updating smithlab_cpp submodule for minor change to progress bar"}},{"before":"bc1061ea013f055ce42f42b5134046facb9e8ef8","after":null,"ref":"refs/heads/update-silence-compiler-warnigs","pushedAt":"2023-10-19T02:40:31.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"}},{"before":"e24bb7251a476342c73def4c13b751cdc2dc7f05","after":"0bc1b192853a285cf471be905f37194ab40fc157","ref":"refs/heads/master","pushedAt":"2023-10-19T02:40:28.000Z","pushType":"pr_merge","commitsCount":3,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Merge pull request #45 from smithlabcode/update-silence-compiler-warnigs\n\nUpdate silence compiler warnigs","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1951077723\" data-permission-text=\"Title is private\" data-url=\"https://github.com/smithlabcode/abismal/issues/45\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/smithlabcode/abismal/pull/45/hovercard\" href=\"https://github.com/smithlabcode/abismal/pull/45\">#45</a> from smithlabcode/update-silence-compiler-warnigs"}},{"before":null,"after":"bc1061ea013f055ce42f42b5134046facb9e8ef8","ref":"refs/heads/update-silence-compiler-warnigs","pushedAt":"2023-10-19T02:35:40.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"abismal.cpp: removing the VERBOSE variable where it was no longer used. Also formatting with clang-format.","shortMessageHtmlLink":"abismal.cpp: removing the VERBOSE variable where it was no longer use…"}},{"before":"ce4d60d0b01d76a5386e1c7b116be26ea6efb19e","after":null,"ref":"refs/heads/update-smithlab-cpp-submodule","pushedAt":"2023-10-19T02:26:35.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"}},{"before":"e97557b83b62cbb3652d0cf6ef802391aedfe2ee","after":"e24bb7251a476342c73def4c13b751cdc2dc7f05","ref":"refs/heads/master","pushedAt":"2023-10-19T02:26:30.000Z","pushType":"pr_merge","commitsCount":2,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"Merge pull request #44 from smithlabcode/update-smithlab-cpp-submodule\n\nupdating smithlab_cpp submodule","shortMessageHtmlLink":"Merge pull request <a class=\"issue-link js-issue-link\" data-error-text=\"Failed to load title\" data-id=\"1951068808\" data-permission-text=\"Title is private\" data-url=\"https://github.com/smithlabcode/abismal/issues/44\" data-hovercard-type=\"pull_request\" data-hovercard-url=\"/smithlabcode/abismal/pull/44/hovercard\" href=\"https://github.com/smithlabcode/abismal/pull/44\">#44</a> from smithlabcode/update-smithlab-cpp-submodule"}},{"before":null,"after":"ce4d60d0b01d76a5386e1c7b116be26ea6efb19e","ref":"refs/heads/update-smithlab-cpp-submodule","pushedAt":"2023-10-19T02:25:58.000Z","pushType":"branch_creation","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"},"commit":{"message":"updating smithlab_cpp submodule","shortMessageHtmlLink":"updating smithlab_cpp submodule"}},{"before":"ef6480f62482b136c602c55cae703f758fbadac0","after":null,"ref":"refs/heads/v322-prep","pushedAt":"2023-10-09T00:30:03.000Z","pushType":"branch_deletion","commitsCount":0,"pusher":{"login":"andrewdavidsmith","name":"Andrew Smith","path":"/andrewdavidsmith","primaryAvatarUrl":"https://avatars.githubusercontent.com/u/7356801?s=80&v=4"}}],"hasNextPage":true,"hasPreviousPage":false,"activityType":"all","actor":null,"timePeriod":"all","sort":"DESC","perPage":30,"cursor":"djE6ks8AAAAEMiUqDwA","startCursor":null,"endCursor":null}},"title":"Activity · smithlabcode/abismal"}