-
Notifications
You must be signed in to change notification settings - Fork 13
/
Slicebox.scala
193 lines (162 loc) · 8.29 KB
/
Slicebox.scala
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
/*
* Copyright 2014 Lars Edenbrandt
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*/
package se.nimsa.sbx.app
import java.nio.file.Paths
import java.util.concurrent.Executors
import java.util.concurrent.TimeUnit.MILLISECONDS
import akka.actor.ActorSystem
import akka.http.scaladsl.Http
import akka.pattern.ask
import akka.stream.ActorMaterializer
import akka.util.Timeout
import com.typesafe.config.{Config, ConfigFactory}
import de.heikoseeberger.akkahttpplayjson.PlayJsonSupport
import se.nimsa.sbx.anonymization.{AnonymizationDAO, AnonymizationServiceActor}
import se.nimsa.sbx.app.GeneralProtocol.SystemInformation
import se.nimsa.sbx.app.routing.SliceboxRoutes
import se.nimsa.sbx.box.{BoxDAO, BoxServiceActor}
import se.nimsa.sbx.dicom.streams.DicomStreamOps
import se.nimsa.sbx.directory.{DirectoryWatchDAO, DirectoryWatchServiceActor}
import se.nimsa.sbx.forwarding.{ForwardingDAO, ForwardingServiceActor}
import se.nimsa.sbx.importing.{ImportDAO, ImportServiceActor}
import se.nimsa.sbx.log.{LogDAO, LogServiceActor, SbxLog}
import se.nimsa.sbx.metadata.{MetaDataDAO, MetaDataServiceActor, PropertiesDAO}
import se.nimsa.sbx.scp.{ScpDAO, ScpServiceActor}
import se.nimsa.sbx.scu.{ScuDAO, ScuServiceActor}
import se.nimsa.sbx.seriestype.{SeriesTypeDAO, SeriesTypeServiceActor}
import se.nimsa.sbx.storage.{FileStorage, S3Storage, StorageService, StorageServiceActor}
import se.nimsa.sbx.user.{UserDAO, UserServiceActor}
import slick.basic.DatabaseConfig
import slick.jdbc.JdbcProfile
import scala.concurrent.duration.{DurationInt, FiniteDuration}
import scala.concurrent.{Await, ExecutionContext, ExecutionContextExecutor}
import scala.reflect.ClassTag
import scala.util.{Failure, Success}
trait SliceboxBase extends SliceboxRoutes with DicomStreamOps with JsonFormats with PlayJsonSupport {
val systemInformation: SystemInformation = SystemInformation("1.4.1")
val appConfig: Config = ConfigFactory.load()
val sliceboxConfig = appConfig.getConfig("slicebox")
implicit def system: ActorSystem
implicit def materializer: ActorMaterializer
implicit def executor: ExecutionContextExecutor
implicit val timeout: Timeout = {
val clientTimeout = appConfig.getDuration("akka.http.client.connecting-timeout", MILLISECONDS)
val serverTimeout = appConfig.getDuration("akka.http.server.request-timeout", MILLISECONDS)
Timeout(math.max(clientTimeout, serverTimeout) + 10, MILLISECONDS)
}
def dbConfig: DatabaseConfig[JdbcProfile]
val userDao = new UserDAO(dbConfig)
val logDao = new LogDAO(dbConfig)
val seriesTypeDao = new SeriesTypeDAO(dbConfig)
val forwardingDao = new ForwardingDAO(dbConfig)
val metaDataDao = new MetaDataDAO(dbConfig)
val propertiesDao = new PropertiesDAO(dbConfig)
val directoryWatchDao = new DirectoryWatchDAO(dbConfig)
val scpDao = new ScpDAO(dbConfig)
val scuDao = new ScuDAO(dbConfig)
val boxDao = new BoxDAO(dbConfig)
val importDao = new ImportDAO(dbConfig)
val anonymizationDao = new AnonymizationDAO(dbConfig)
val createDbTables = for {
_ <- logDao.create()
_ <- seriesTypeDao.create()
_ <- forwardingDao.create()
_ <- metaDataDao.create()
_ <- propertiesDao.create()
_ <- directoryWatchDao.create()
_ <- scpDao.create()
_ <- scuDao.create()
_ <- boxDao.create()
_ <- importDao.create()
_ <- userDao.create()
_ <- anonymizationDao.create()
} yield Unit
createDbTables.onComplete {
case Success(_) => SbxLog.default("System", "Database tables created. ")
case Failure(e) => SbxLog.error("System", s"Could not create tables. ${e.getMessage}")
}
Await.ready(createDbTables, 1.minute)
val host = sliceboxConfig.getString("host")
val port = sliceboxConfig.getInt("port")
val publicHost = sliceboxConfig.getString("public.host")
val publicPort = sliceboxConfig.getInt("public.port")
val useSsl = sliceboxConfig.getString("ssl.ssl-encryption") == "on"
val apiBaseURL = {
val withReverseProxy = (host != publicHost) || (port != publicPort)
val withSsl = withReverseProxy && sliceboxConfig.getBoolean("public.with-ssl") || useSsl
val ssl = if (withSsl) "s" else ""
if (!withSsl && (publicPort == 80) || withSsl && (publicPort == 443))
s"http$ssl://$publicHost/api"
else
s"http$ssl://$publicHost:$publicPort/api"
}
val superUser = sliceboxConfig.getString("superuser.user")
val superPassword = sliceboxConfig.getString("superuser.password")
val sessionsIncludeIpAndUserAgent: Boolean = sliceboxConfig.getBoolean("user-sessions-include-ip-and-useragent")
def storage: StorageService
val userService = {
val sessionTimeout = sliceboxConfig.getDuration("session-timeout", MILLISECONDS)
system.actorOf(UserServiceActor.props(userDao, superUser, superPassword, sessionTimeout), name = "UserService")
}
val logService = system.actorOf(LogServiceActor.props(logDao), name = "LogService")
val metaDataService = system.actorOf(MetaDataServiceActor.props(metaDataDao, propertiesDao), name = "MetaDataService")
val storageService = system.actorOf(StorageServiceActor.props(storage), name = "StorageService")
val anonymizationService = {
val purgeEmptyAnonymizationKeys = sliceboxConfig.getBoolean("anonymization.purge-empty-keys")
system.actorOf(AnonymizationServiceActor.props(anonymizationDao, purgeEmptyAnonymizationKeys), name = "AnonymizationService")
}
val boxService = system.actorOf(BoxServiceActor.props(boxDao, apiBaseURL, storage), name = "BoxService")
val scpService = system.actorOf(ScpServiceActor.props(scpDao, storage), name = "ScpService")
val scuService = system.actorOf(ScuServiceActor.props(scuDao, storage), name = "ScuService")
val directoryService = system.actorOf(DirectoryWatchServiceActor.props(directoryWatchDao, storage), name = "DirectoryService")
val seriesTypeService = system.actorOf(SeriesTypeServiceActor.props(seriesTypeDao, storage), name = "SeriesTypeService")
val forwardingService = system.actorOf(ForwardingServiceActor.props(forwardingDao, storage), name = "ForwardingService")
val importService = system.actorOf(ImportServiceActor.props(importDao), name = "ImportService")
override def callAnonymizationService[R: ClassTag](message: Any) = anonymizationService.ask(message).mapTo[R]
override def callMetaDataService[R: ClassTag](message: Any) = metaDataService.ask(message).mapTo[R]
override def scheduleTask(delay: FiniteDuration)(task: => Unit) = system.scheduler.scheduleOnce(delay)(task)
// special context for blocking IO
val blockingIoContext = ExecutionContext.fromExecutorService(Executors.newFixedThreadPool(4))
}
object Slicebox extends {
implicit val system = ActorSystem("slicebox")
implicit val materializer = ActorMaterializer()
implicit val executor = system.dispatcher
val cfg = ConfigFactory.load().getConfig("slicebox")
val dbConfig = DatabaseConfig.forConfig[JdbcProfile]("slicebox.database.config")
val chunkSize: Int = cfg.getMemorySize("stream.chunk-size").toBytes.toInt
val storage =
if (cfg.getString("dicom-storage.config.name") == "s3")
new S3Storage(cfg.getString("dicom-storage.config.bucket"), cfg.getString("dicom-storage.config.prefix"), cfg.getString("dicom-storage.config.region"))(system, materializer) {
override val streamChunkSize: Int = chunkSize
}
else
new FileStorage(Paths.get(cfg.getString("dicom-storage.file-system.path"))) {
override val streamChunkSize: Int = chunkSize
}
} with SliceboxBase with App {
val bindFuture = if (useSsl) {
Http().setDefaultClientHttpsContext(SslConfiguration.httpsContext)
Http().bindAndHandle(routes, host, port, SslConfiguration.httpsContext)
} else
Http().bindAndHandle(routes, host, port)
bindFuture onComplete {
case Success(_) =>
SbxLog.info("System", s"Slicebox bound to $host:$port")
case Failure(e) =>
SbxLog.error("System", s"Could not bind to $host:$port, ${e.getMessage}")
}
}