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Masking prophages in bacterial genomes before building database as Phanta does #29

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shenwei356 opened this issue Jun 6, 2023 · 2 comments
Open

Masking prophages in bacterial genomes before building database as Phanta does #29

shenwei356 opened this issue Jun 6, 2023 · 2 comments
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database work-in-progress

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shenwei356 added a commit that referenced this issue Jun 8, 2023
@shenwei356
add code to mask prophages. #29
36b3be7
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Should we update the genome size after removing the masked Ns?

The answer is probably yes.

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Available here: https://1drv.ms/u/s!Ag89cZ8NYcqtjHwpe0ND3SUEhyrp?e=QDRbEC , files are

gtdb_masked.part_1.kmcp.tar.gz
gtdb_masked.part_2.kmcp.tar.gz

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