InputQueue Maker

[ryanmrichard]

For now, this module will take a ChemicalSystem object and return a std::map<ChemicalSystem, double> (assuming we can use ChemicalSystem as a key, which I don't think we can; if we can't then return a std::vector<std::pair<ChemicalSystem, double>>) The return is a list of ChemicalSystem objects we need to run and their weights. Internally the module will:

• Turn the ChemicalSystem into a FragmentedNuclei object by calling a module satisfying the FragmentedNuclei property type.
• Run the FragmentedNuclei through the intersection finder.
• Add the intersections to the FragmentedNuclei object (which now contains the fragments and the intersections).
• Run the new FragmentedNuclei object through a module satisfying FragmentedMolecule resulting in a FragmentedMolecule object.
• Turn each fragment in the FragmentedMolecule object into a ChemicalSystem object and associate with that object the appropriate weight (1 if the fragment was one of the original fragments and the weight returned by the intersection finder otherwise).
• Return the ChemicalSystem weight pairs.

N.B. We may need to tweak the inputs to the FragmentedNuclei modules and FragmentedMolecule
modules to be consistent with the above.