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This repository has been archived by the owner on Dec 3, 2019. It is now read-only.
In the mpi build of v1.0.7 throws a segmentation fault when the first taxa alphabetically is used in a clade constraint. I have not tested the regular, non mpi build.
It works if the first taxa read in (the first taxon alphabetically) is not included in a constraint.
The easy work around is to rename a taxon not included in constraints to be alphabetically first.
I've attached my alignment file and code to reproduce the error.
inFile="AHE-L13.threeg.txt"data<- readDiscreteCharacterData(inFile)
names<- data.names()
outgroup=clade("Gallus_gallus")
iguania=clade("Anolis_brasiliensis", "Anolis_meridionalis", "Tropidurus_oreadicus")
a=clade("Kentropyx_calcarata", "Emeiva_emeiva")
b=clade("Kentropyx_calcarata", "Emeiva_emeiva","Ameivula_mumbuca")
# This works fineconstraints=[outgroup,iguania,a]
topology~ dnUniformTopology(names,constraints=constraints)
# This gives: Segmentation faultconstraints=[outgroup,iguania,b]
topology~ dnUniformTopology(names,constraints=constraints)
In the mpi build of v1.0.7 throws a segmentation fault when the first taxa alphabetically is used in a clade constraint. I have not tested the regular, non mpi build.
It works if the first taxa read in (the first taxon alphabetically) is not included in a constraint.
The easy work around is to rename a taxon not included in constraints to be alphabetically first.
I've attached my alignment file and code to reproduce the error.
AHE-L13.threeg.txt
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