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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(GeomStepribbon)
export(calculateShiftBayesFactor)
export(colFun)
export(combineTraces)
export(densiTreeWithBranchData)
export(dropTip)
export(geom_stepribbon)
export(getMAP)
export(matchNodes)
export(plotAncStatesMAP)
export(plotAncStatesPie)
export(plotDivRates)
export(plotDiversityOBDP)
export(plotFBDTree)
export(plotHiSSE)
export(plotMassExtinctions)
export(plotMuSSE)
export(plotPopSizes)
export(plotPostPredStats)
export(plotTrace)
export(plotTree)
export(posteriorSamplesToParametricPrior)
export(processAncStates)
export(processBranchData)
export(processDivRates)
export(processPopSizes)
export(processPostPredStats)
export(processSSE)
export(readOBDP)
export(readTrace)
export(readTrees)
export(removeBurnin)
export(rerootPhylo)
export(setMRFGlobalScaleHyperpriorNShifts)
export(simulateMRF)
export(summarizeTrace)
importClassesFrom(tidytree,treedata)
importFrom(ape,collapse.singles)
importFrom(ape,ltt.plot.coords)
importFrom(ape,read.tree)
importFrom(ggplot2,GeomRibbon)
importFrom(ggplot2,aes)
importFrom(ggplot2,aes_)
importFrom(ggplot2,annotate)
importFrom(ggplot2,element_blank)
importFrom(ggplot2,element_line)
importFrom(ggplot2,element_rect)
importFrom(ggplot2,geom_line)
importFrom(ggplot2,ggplot)
importFrom(ggplot2,ggtitle)
importFrom(ggplot2,layer)
importFrom(ggplot2,scale_color_manual)
importFrom(ggplot2,scale_x_continuous)
importFrom(ggplot2,scale_y_continuous)
importFrom(ggplot2,theme)
importFrom(grDevices,col2rgb)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,axis)
importFrom(graphics,par)
importFrom(graphics,plot.new)
importFrom(graphics,plot.window)
importFrom(graphics,strwidth)
importFrom(graphics,text)
importFrom(scales,colour_ramp)
importFrom(stats,approxfun)
importFrom(stats,density)
importFrom(stats,na.omit)
importFrom(stats,optimize)
importFrom(stats,pnorm)
importFrom(stats,qcauchy)
importFrom(stats,quantile)
importFrom(stats,rcauchy)
importFrom(stats,rnorm)
importFrom(stats,time)
importFrom(stats,weighted.mean)
importFrom(tidyr,pivot_longer)
importFrom(utils,read.csv)
importFrom(utils,read.table)
importFrom(utils,setTxtProgressBar)
importFrom(utils,txtProgressBar)