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When I compiled the code, I ran into issues with CMake not finding RDKit libs. I believe this is because I have RDKit installed through Anaconda. Specifically I found ${RDKIT_LIBRARIES} was not set and CMake was picking up a Python install outside of the Anaconda installation I was trying to use. The solution was to add more compile flags:
@kheyer We too had some headaches getting shapeit to compile in conda envs. Thankfully your comment saved us a little time debugging. We also needed to install gxx_linux-64.
Here is a copy and paste of my terminal if it is fruitful for anyone out there:
Thanks for making this available through RDKit!
When I compiled the code, I ran into issues with CMake not finding RDKit libs. I believe this is because I have RDKit installed through Anaconda. Specifically I found
${RDKIT_LIBRARIES}
was not set and CMake was picking up a Python install outside of the Anaconda installation I was trying to use. The solution was to add more compile flags:After adding the additional flags, I was able to successfully compile the code.
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