Is it possible to depict Markush structures images using RDKit? #7093
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lucas-morin
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Hello,
Does RDKit allow to draw Markush structures images?
![](https://private-user-images.githubusercontent.com/73230090/299701303-6e0d8a30-9896-4cd0-a245-5fc56d74c13f.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.eyJpc3MiOiJnaXRodWIuY29tIiwiYXVkIjoicmF3LmdpdGh1YnVzZXJjb250ZW50LmNvbSIsImtleSI6ImtleTUiLCJleHAiOjE3MTgwNDA1ODIsIm5iZiI6MTcxODA0MDI4MiwicGF0aCI6Ii83MzIzMDA5MC8yOTk3MDEzMDMtNmUwZDhhMzAtOTg5Ni00Y2QwLWEyNDUtNWZjNTZkNzRjMTNmLnBuZz9YLUFtei1BbGdvcml0aG09QVdTNC1ITUFDLVNIQTI1NiZYLUFtei1DcmVkZW50aWFsPUFLSUFWQ09EWUxTQTUzUFFLNFpBJTJGMjAyNDA2MTAlMkZ1cy1lYXN0LTElMkZzMyUyRmF3czRfcmVxdWVzdCZYLUFtei1EYXRlPTIwMjQwNjEwVDE3MjQ0MlomWC1BbXotRXhwaXJlcz0zMDAmWC1BbXotU2lnbmF0dXJlPWVmYTcwYjZkYmY3OGZiOWI2YjNkYTI2NGExNzg4MGU1ODQyMDNhZDI5YTJhNjU3MmQ0M2U0NDY3NmI0MGE4YjkmWC1BbXotU2lnbmVkSGVhZGVycz1ob3N0JmFjdG9yX2lkPTAma2V5X2lkPTAmcmVwb19pZD0wIn0.oFeQrI7CegNMEkhdJrOGyEdpRW6J0GBi8nuIubUItmc)
![](https://private-user-images.githubusercontent.com/73230090/299701124-2912acd0-bfc5-4124-812f-3603a070b8a4.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.f6G2SV9MitZqxaZS96qFGJFGeL1tZPIOnwOr68TqSsA)
![](https://private-user-images.githubusercontent.com/73230090/299700992-3bdb4f90-6733-4e84-9968-e4907c627b6f.png?jwt=eyJhbGciOiJIUzI1NiIsInR5cCI6IkpXVCJ9.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.7DGDtnRB5kYtSWVkpw96cy_HRKUXem-PkAodNHoapXg)
Especially, is it possible to draw bonds connected to cycles, as in the following example:
Or repeating units, with "small parenthesis":
Or "large brackets", like in this image:
Can RDKit depictions mimic visually these example images?
Thanks for your help,
Best,
Lucas
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