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I don't think learner 1D is meant to work with 2D arrays. You may reshape your outputs to be a 1D array and then reshape them back though. Would that be a satisfactory solution?
The datasaver also allows for any data format, so it isn't really an issue anyway. The only thing is that because it works for a 1D learner, I also expected it to work for the 2D learner, which took me some time to figure out.
I think it might be nice to make it consistent, perhaps even by making it also break in the 1D case.
The following code causes the 2D learner to break, whereas the 1D learner works fine.
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