Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Missing chromosomes? #14

Open
MaxSalm opened this issue Sep 14, 2020 · 2 comments
Open

Missing chromosomes? #14

MaxSalm opened this issue Sep 14, 2020 · 2 comments

Comments

@MaxSalm
Copy link

MaxSalm commented Sep 14, 2020

Hi there, thank you for this initiative, it is vital for the community. I have run into a problem. I tried to simulate a very simple situation (loss of chr3 & chr8, gain of chr4 & chr9). Rudimentary logR analyis shows the events have been engineered into the target BAM. However, chr10 and chr15-22 also appear to have been lost ...

image

All ideas welcome!
@MaxSalm
Copy link
Author

MaxSalm commented Sep 14, 2020

Is this to do with chromosome ordering by any chance?

@suluxan
Copy link
Collaborator

suluxan commented Feb 19, 2021

Hey Max,

Sorry for the late reply, was there any update on this?
Were chr 10 and 15-22 included in the input bam files?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@MaxSalm @suluxan