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For the below molecule I get very strange MBIS charges with the combination of DDX implicit solvent and the def2-TZVPPD basis set compared to using def2-TZVP. I also only see this happen for molecules containing Iodine.
fromqcelemental.models.common_modelsimportModelfromqcelemental.modelsimportAtomicInput, Moleculeimportqcengineimportnumpyqc_mol=Molecule.from_data(
""" 0 1 C -2.770566610000 0.138041700000 0.070178320000 C -1.574766790000 -2.182402580000 0.041630990000 C 1.033304570000 -2.323434390000 -0.024422900000 C 2.435037490000 -0.121299970000 -0.061679550000 C 1.259017560000 2.209348470000 -0.033641890000 C -1.350150920000 2.328080550000 0.032456990000 I 6.389923580000 -0.318582790000 -0.161855610000 H -4.794725900000 0.238941070000 0.121450260000 H -2.664958600000 -3.891956620000 0.070604800000 H 1.951364020000 -4.127647160000 -0.046322210000 H 2.351710440000 3.913369620000 -0.062674850000 H -2.265188840000 4.137542080000 0.054275640000 units bohr no_com no_reorient """
)
# create the psi4 jobspec=Model(method="PBE0", basis="def2-TZVPPD")
task=AtomicInput(
molecule=qc_mol,
driver="properties",
keywords={
"function_kwargs": {
"properties": [
# "dipole_polarizabilities","mbis_charges",
"quadrupole",
"mulliken_charges",
"dipole",
"lowdin_charges",
"wiberg_lowdin_indices",
"mayer_indices",
]
},
"ddx": True,
"ddx_model": "pcm",
"ddx_solvent_epsilon": 4.0,
"ddx_solvent": "water",
},
model=spec,
)
result=qcengine.compute(
input_data=task, raise_error=True, task_config={"ncores": 4}, program="psi4"
)
print(result.extras["qcvars"]["MBIS CHARGES"])
# packages in environment at /Users/joshua/mambaforge/envs/qcsubmit-test-psi4:
#
# Name Version Build Channel
psi4 1.9 py311h5db8dd7_1 conda-forge
pyddx 0.6.0 py311h6a48a4f_1 conda-forge
The text was updated successfully, but these errors were encountered:
Does the overall energy look sensible when you've got the additional diffuse functions?
I occasionally find that def2-TZVPD converges to some odd state with strange properties (energy, dipole etc). I'd put it down to some form of numerical difficulties as I could usually use a mixed basis of def2-TZVP on some atoms and def2-TZVPD on others and get logical values (identity of which atoms to change was system dependent, but often H is the main culprit).
For the below molecule I get very strange MBIS charges with the combination of DDX implicit solvent and the
def2-TZVPPD
basis set compared to usingdef2-TZVP
. I also only see this happen for molecules containing Iodine.def2-TZVPPD
def2-TZVP
conda output
The text was updated successfully, but these errors were encountered: