Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Is there any way to get total number of reads in the alignment bam file? #228

Open
yazhinia opened this issue Sep 2, 2022 · 0 comments
Open

Is there any way to get total number of reads in the alignment bam file? #228

yazhinia opened this issue Sep 2, 2022 · 0 comments

Comments

@yazhinia
Copy link

yazhinia commented Sep 2, 2022

Hello,
I wanted to create a vector of read ids with some statistics on each alignment. For this, I would like to pre-allocate the space for the vector. Is there any way in bamtools to get the number of alignment lines or reads in the bam file.

Thanks very much.
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@yazhinia