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does bamtools stats consider supplementary alignment #175

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prasundutta87 opened this issue Feb 8, 2018 · 0 comments
Open

does bamtools stats consider supplementary alignment #175

prasundutta87 opened this issue Feb 8, 2018 · 0 comments

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@prasundutta87
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Hi,

Do you consider supplementary alignment (flag 0x800) during stats calculation?

The reason I am asking is because there is minor difference in samtools flagstat bamtools stats and I would like to know why the difference is coming.
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