split by reference chr = "EOF marker is absent. The input is probably truncated."

[map2085]

bamtools split -in my.bam -stub split -reference

The command completes successfully, but all of the resulting files are all "truncated".

samtools view -c split.REF_chr1.bam

[W::bam_hdr_read] EOF marker is absent. The input is probably truncated.

This happens for every split file.

Note that my.bam itself is fine (not truncated), though it is large (119 GB).

$ bamtools --version

bamtools 2.4.1
Part of BamTools API and toolkit
Primary authors: Derek Barnett, Erik Garrison, Michael Stromberg
(c) 2009-2012 Marth Lab, Biology Dept., Boston College

[coutuc]

I am having exactly the same issue...following

[MamgKhushi]

Hello, I am having the same issue as mentioned above, were you able to find a reason/solution to this? It would be helpful for me.
Thank you in advance! :)