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map2slim memory requirements #263

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emrobe opened this issue Sep 10, 2018 · 0 comments
Open

map2slim memory requirements #263

emrobe opened this issue Sep 10, 2018 · 0 comments

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@emrobe
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emrobe commented Sep 10, 2018

Hi,
I'm trying to use the --map2slim functionality to map a gaf-file to metagenomics slim. It' s 90+ GB in size. The process owltools starts swapping and dies at 0,5 TB (Yes, Terabyte) memory usage. Any way around this (except splitting my file into X pieces after prototyping size vs. memory usage)?
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@emrobe