{"payload":{"pageCount":4,"repositories":[{"type":"Public","name":"ctims","owner":"pughlab","isFork":false,"description":"CTIMS project","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":1,"issueCount":8,"starsCount":2,"forksCount":8,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T18:35:18.091Z"}},{"type":"Public","name":"cbpOrganizer","owner":"pughlab","isFork":false,"description":"Tool to help cbioportal study owners to organize their studies for publishing to cbioportal","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":4,"starsCount":0,"forksCount":1,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-28T14:36:44.942Z"}},{"type":"Public","name":"matchminer-api","owner":"pughlab","isFork":true,"description":"A platform for matching patient-specific genomic profiles to precision cancer medicine clinical trials","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":0,"forksCount":13,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T15:17:45.331Z"}},{"type":"Public","name":"TGL49_CHARM_LFS_Fragmentomics","owner":"pughlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-24T12:28:57.955Z"}},{"type":"Public","name":"HCC_cfMeDIP","owner":"pughlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T20:51:35.335Z"}},{"type":"Public","name":"ped_CapTCRseq","owner":"pughlab","isFork":false,"description":"Dynamics of peripheral T-cell repertoire in pediatric cancer patients over the course of chemoradiation","allTopics":["ngs","tcr-repertoire","pediatric-cancer","mixcr"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-23T14:50:18.249Z"}},{"type":"Public","name":"ORACLE_TCR","owner":"pughlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-17T21:00:17.134Z"}},{"type":"Public","name":"oncographer","owner":"pughlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-16T18:02:29.278Z"}},{"type":"Public","name":"pipeline-suite","owner":"pughlab","isFork":false,"description":"Collection of pipelines for NGS analysis along with utilities","allTopics":[],"primaryLanguage":{"name":"Perl","color":"#0298c3"},"pullRequestCount":0,"issueCount":0,"starsCount":3,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-02T15:29:14.325Z"}},{"type":"Public","name":"IRIS_BulkTCR","owner":"pughlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-16T15:35:34.930Z"}},{"type":"Public","name":"INSPIRE_TCR","owner":"pughlab","isFork":false,"description":"Pan-cancer assessment of the tumour and systemic T-cell receptor repertoire dynamics in patients treated with pembrolizumab","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-04-15T12:22:32.146Z"}},{"type":"Public","name":"crescent","owner":"pughlab","isFork":false,"description":"The CanceR Single Cell ExpressioN Toolkit one-line-command applications.","allTopics":["docker","web-server","toolkit","cancer","databases","portal","single-cell-rna-seq","single-cell-analysis"],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":1,"starsCount":8,"forksCount":4,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-20T18:58:59.032Z"}},{"type":"Public","name":"GSoC","owner":"pughlab","isFork":false,"description":"Google Summer of Code Ideas list","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":3,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-02-02T20:25:40.035Z"}},{"type":"Public","name":"ctims-pages","owner":"pughlab","isFork":false,"description":"CTIMS Github Pages","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-01-10T20:47:10.559Z"}},{"type":"Public","name":"matchengine-V2","owner":"pughlab","isFork":true,"description":"Open source engine for matching cancer patients to precision medicine clinical trials (V2).","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":14,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-22T19:05:43.349Z"}},{"type":"Public","name":"CNAqc","owner":"pughlab","isFork":true,"description":"CNAqc - Copy Number Alteration (CNA) Quality Check package","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":9,"license":"GNU General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-20T19:23:40.425Z"}},{"type":"Public","name":"cbioportal","owner":"pughlab","isFork":true,"description":"cBioPortal for Cancer Genomics","allTopics":["dockerfiles","travis-ci-configuration","python-wrapper","mybatis","spring-mvc","restful-webservices","keycloak-adapter"],"primaryLanguage":{"name":"Java","color":"#b07219"},"pullRequestCount":12,"issueCount":0,"starsCount":0,"forksCount":432,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-08T23:41:54.925Z"}},{"type":"Public","name":"rascal","owner":"pughlab","isFork":true,"description":"R package and Shiny app providing functions for scaling relative copy number to absolute values for shallow whole genome sequencing of cancer samples.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-11-03T14:49:59.311Z"}},{"type":"Public","name":"paper-inspire-cfmedip","owner":"pughlab","isFork":false,"description":"Accompanying code for INSPIRE cfMeDIP-seq manuscript","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-10-02T20:17:18.416Z"}},{"type":"Public","name":"SRTPMs","owner":"pughlab","isFork":true,"description":"Spatially Resolved Tumor Purity Maps (SRTPMs)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":6,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-29T13:53:58.957Z"}},{"type":"Public","name":"cbioportal-frontend","owner":"pughlab","isFork":true,"description":"React Frontend of cBioPortal 🎉","allTopics":["webpack","reactjs","cbioportal"],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":233,"license":"GNU Affero General Public License v3.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-09-11T15:06:33.869Z"}},{"type":"Public","name":"MEDIPIPE","owner":"pughlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":1,"starsCount":10,"forksCount":2,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-08-10T15:09:07.036Z"}},{"type":"Public","name":"inspire-genomics","owner":"pughlab","isFork":false,"description":"Pan-cancer analysis of genomic and immune landscape profiles of metastatic solid tumors treated with pembrolizumab","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-17T00:38:08.865Z"}},{"type":"Public","name":"CapTCR-TIL-Tracking","owner":"pughlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-07-05T23:07:33.428Z"}},{"type":"Public","name":"LFS-early-detection-ctdna","owner":"pughlab","isFork":false,"description":"Multi-modal analysis of cell-free DNA for the early detection of cancer in Li-Fraumeni syndrome.","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":5,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-30T20:56:59.287Z"}},{"type":"Public","name":"fragmentomics","owner":"pughlab","isFork":false,"description":"Collection of fragmentomic analysis scripts","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":9,"forksCount":2,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-30T20:53:03.746Z"}},{"type":"Public","name":"mcoder","owner":"pughlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"JavaScript","color":"#f1e05a"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-29T17:17:57.294Z"}},{"type":"Public","name":"EVOLVE_ctDNA","owner":"pughlab","isFork":false,"description":"code used for the analysis and visualization of the EVOLVE ctDNA project","allTopics":[],"primaryLanguage":{"name":"R","color":"#198CE7"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-06-26T14:30:48.600Z"}},{"type":"Public","name":"immunogenomics_pedNST","owner":"pughlab","isFork":false,"description":"Immunogenomics of pediatric nervous system tumours","allTopics":["rna-seq","ngs","pediatric-cancer","immune-repertoire","immune-infiltration"],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-30T17:33:12.615Z"}},{"type":"Public","name":"cbioportal-docs","owner":"pughlab","isFork":false,"description":"","allTopics":[],"primaryLanguage":null,"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2023-05-18T18:35:04.719Z"}}],"repositoryCount":101,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}