{"payload":{"pageCount":6,"repositories":[{"type":"Public","name":"CaImAn","owner":"flatironinstitute","isFork":false,"description":"Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.","allTopics":["2-photon","calcium-imaging","motion-correction","source-extraction","deconvolution","cnmf"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":6,"issueCount":56,"starsCount":609,"forksCount":358,"license":"GNU General Public License v2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-13T02:26:52.160Z"}},{"type":"Public","name":"comptools24","owner":"flatironinstitute","isFork":false,"description":"Computational Tools for PDEs with Complicated Geometries and Interfaces workshop materials, June 10-14, 2024.","allTopics":[],"primaryLanguage":{"name":"MATLAB","color":"#e16737"},"pullRequestCount":1,"issueCount":0,"starsCount":14,"forksCount":4,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7,2,15,69],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-13T02:12:02.089Z"}},{"type":"Public","name":"jax-finufft","owner":"flatironinstitute","isFork":false,"description":"JAX bindings to the Flatiron Institute Non-uniform Fast Fourier Transform (FINUFFT) library","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":5,"starsCount":72,"forksCount":2,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4,0,0,15,2,2,3,1,8,1,1,0,4,2,1,0,1,2,3,1,0,1,2,3,2,3,0,1,7,0,3,0,1,1,1,1],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-13T00:39:41.574Z"}},{"type":"Public","name":"PointCloud_Regression","owner":"flatironinstitute","isFork":false,"description":"Point Cloud regression with new algebraic representation on ModelNet dataset (ICCV 2023)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":8,"forksCount":1,"license":null,"participation":[7,7,0,2,7,7,16,1,1,0,5,0,0,0,3,0,0,1,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1,2,3,6,5,4,30,40,0,0,0,11],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T21:59:44.703Z"}},{"type":"Public","name":"stan-playground","owner":"flatironinstitute","isFork":false,"description":"Run Stan models in the browser","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":12,"issueCount":10,"starsCount":2,"forksCount":0,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,50,28,7,24,17],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T21:27:14.222Z"}},{"type":"Public","name":"flathub","owner":"flatironinstitute","isFork":false,"description":"A simple elasticsearch frontend for serving astrophysical simulation catalog data","allTopics":[],"primaryLanguage":{"name":"Haskell","color":"#5e5086"},"pullRequestCount":0,"issueCount":14,"starsCount":10,"forksCount":5,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T20:43:43.603Z"}},{"type":"Public","name":"nifty-ls","owner":"flatironinstitute","isFork":false,"description":"A fast Lomb-Scargle periodogram. It's nifty, and uses a NUFFT!","allTopics":["time-series","lomb-scargle-periodogram","spectral-analysis"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":1,"starsCount":16,"forksCount":1,"license":"Apache License 2.0","participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14,5,15,2,0,8,6,53,3,13,9,2,4,9],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T18:47:46.307Z"}},{"type":"Public","name":"finufft","owner":"flatironinstitute","isFork":false,"description":"Non-uniform fast Fourier transform library of types 1,2,3 in dimensions 1,2,3","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":10,"issueCount":44,"starsCount":257,"forksCount":72,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T18:26:52.433Z"}},{"type":"Public","name":"fmm2d","owner":"flatironinstitute","isFork":false,"description":"This codebase is a set of libraries to compute N-body interactions governed by the Laplace and Helmholtz equations, to a specified precision, in two dimensions, on a multi-core shared-memory machine.","allTopics":[],"primaryLanguage":{"name":"Fortran","color":"#4d41b1"},"pullRequestCount":0,"issueCount":6,"starsCount":21,"forksCount":10,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T15:57:09.866Z"}},{"type":"Public","name":"ccn-software-fens-2024","owner":"flatironinstitute","isFork":false,"description":"Materials for CCN software workshop at FENS 2024","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T14:15:21.429Z"}},{"type":"Public","name":"sciware","owner":"flatironinstitute","isFork":false,"description":"Learning materials for scientific software development","allTopics":["learning","science","education","software-development"],"primaryLanguage":{"name":"HTML","color":"#e34c26"},"pullRequestCount":0,"issueCount":2,"starsCount":73,"forksCount":34,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-12T13:51:13.979Z"}},{"type":"Public","name":"PyBenchFramework","owner":"flatironinstitute","isFork":false,"description":"BenchmarkToolkit is a Python library designed to simplify and streamline benchmarking tasks. This library provides a high-level abstraction over various benchmarking functions, allowing developers to easily perform performance testing and analysis with minimal setup.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":[0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2,2,5,7,12],"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T23:19:26.877Z"}},{"type":"Public","name":"neuroRSE","owner":"flatironinstitute","isFork":false,"description":"Website for CCN's neuroRSE group","allTopics":[],"primaryLanguage":{"name":"CSS","color":"#563d7c"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T19:14:12.958Z"}},{"type":"Public","name":"sciware-vscode-exercise","owner":"flatironinstitute","isFork":false,"description":"Python programming exercise for the SciWare on VS Code","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-11T14:19:01.284Z"}},{"type":"Public","name":"Ensemble-reweighting-using-Cryo-EM-particles","owner":"flatironinstitute","isFork":false,"description":"","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":1,"issueCount":2,"starsCount":8,"forksCount":3,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-10T20:36:56.259Z"}},{"type":"Public","name":"nemos","owner":"flatironinstitute","isFork":false,"description":"NEural MOdelS, a statistical modeling framework for neuroscience.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":68,"starsCount":34,"forksCount":7,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-10T19:18:48.555Z"}},{"type":"Public","name":"inferelator-velocity","owner":"flatironinstitute","isFork":false,"description":"Calculate dynamic (time-dependent) latent parameters from single-cell expression data","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":2,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-07T20:07:19.503Z"}},{"type":"Public","name":"cppdlr","owner":"flatironinstitute","isFork":false,"description":"Discrete Lehmann representation of imaginary time Green's functions","allTopics":[],"primaryLanguage":{"name":"C++","color":"#f34b7d"},"pullRequestCount":0,"issueCount":2,"starsCount":8,"forksCount":3,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-06T22:30:13.161Z"}},{"type":"Public","name":"ccq-software-build","owner":"flatironinstitute","isFork":false,"description":"CCQ software build scripts","allTopics":[],"primaryLanguage":{"name":"Shell","color":"#89e051"},"pullRequestCount":0,"issueCount":0,"starsCount":10,"forksCount":4,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-06T16:57:43.608Z"}},{"type":"Public","name":"sciware-command-intro","owner":"flatironinstitute","isFork":false,"description":"demo repository for use with Sciware intro to the command line","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":1,"starsCount":0,"forksCount":1,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-03T20:19:59.986Z"}},{"type":"Public","name":"nixpack","owner":"flatironinstitute","isFork":false,"description":"nix+spack = nixpack (spanix?)","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":4,"issueCount":1,"starsCount":37,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-06-02T15:03:30.179Z"}},{"type":"Public","name":"nemos-workshop-feb-2024","owner":"flatironinstitute","isFork":false,"description":"Materials for nemos workshop, Feb 2024","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":5,"starsCount":0,"forksCount":0,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T20:24:56.721Z"}},{"type":"Public","name":"slurm","owner":"flatironinstitute","isFork":true,"description":"Slurm: A Highly Scalable Workload Manager","allTopics":[],"primaryLanguage":{"name":"C","color":"#555555"},"pullRequestCount":0,"issueCount":0,"starsCount":1,"forksCount":632,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-31T19:37:08.537Z"}},{"type":"Public","name":"polymathic_viz","owner":"flatironinstitute","isFork":false,"description":"Tools for creating visualizations that are useful for the polymathic project.","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":"BSD 2-Clause \"Simplified\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-30T15:50:46.832Z"}},{"type":"Public","name":"aLENS_analysis","owner":"flatironinstitute","isFork":false,"description":"Postprocessing & analysis scripts for aLENS data","allTopics":[],"primaryLanguage":{"name":"Jupyter Notebook","color":"#DA5B0B"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":1,"license":"Other","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T17:38:53.428Z"}},{"type":"Public","name":"martini-microtubule","owner":"flatironinstitute","isFork":false,"description":"Scripts for Iteratively Refined Distance Based Elastic Network adapted for microtubules.","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":0,"issueCount":0,"starsCount":0,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-29T14:35:06.916Z"}},{"type":"Public","name":"neurosift","owner":"flatironinstitute","isFork":false,"description":"Browser-based NWB visualization and DANDI exploration","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":1,"issueCount":43,"starsCount":36,"forksCount":4,"license":"Apache License 2.0","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-27T19:16:28.846Z"}},{"type":"Public","name":"deepblast","owner":"flatironinstitute","isFork":false,"description":"Neural Networks for Protein Sequence Alignment","allTopics":["protein-structure","language-modeling","protein","neural-networks","protein-sequences","sequence-alignment","structural-alignments"],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":8,"issueCount":24,"starsCount":107,"forksCount":16,"license":"BSD 3-Clause \"New\" or \"Revised\" License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-27T13:11:41.221Z"}},{"type":"Public","name":"dendro-docs","owner":"flatironinstitute","isFork":false,"description":"Documentation for Dendro","allTopics":[],"primaryLanguage":{"name":"TypeScript","color":"#3178c6"},"pullRequestCount":0,"issueCount":3,"starsCount":1,"forksCount":0,"license":null,"participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-26T16:39:48.422Z"}},{"type":"Public","name":"flatiron-coffee","owner":"flatironinstitute","isFork":false,"description":"Meet your colleagues across the Institute","allTopics":[],"primaryLanguage":{"name":"Python","color":"#3572A5"},"pullRequestCount":1,"issueCount":0,"starsCount":4,"forksCount":4,"license":"MIT License","participation":null,"lastUpdated":{"hasBeenPushedTo":true,"timestamp":"2024-05-21T05:30:35.530Z"}}],"repositoryCount":169,"userInfo":null,"searchable":true,"definitions":[],"typeFilters":[{"id":"all","text":"All"},{"id":"public","text":"Public"},{"id":"source","text":"Sources"},{"id":"fork","text":"Forks"},{"id":"archived","text":"Archived"},{"id":"template","text":"Templates"}],"compactMode":false},"title":"Repositories"}