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Intel compiler builds sometimes fail in a test with timeout issues possible related to quit() function not returning from the interpreter.
Rerunning the CI seems to fix the issue and the CI passes.
Overview of the CI issue
See the log below:
121/266 Test #76: hoctests::test_nrniv-launch_py ...........................................***Failed 10.60 sec
['-isatty', '-nobanner', '-nogui', '-c', 'a=5', '-']
func square() {
return $1*$1
}
print "a = ", a
print "square(a)=", square(a)
quit()
Traceback (most recent call last):
File "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178982/J1073852/spack-build/spack-stage-neuron-develop-arr5lxib65hkgzaekzx7s3nhmkjjfyp3/spack-build-arr5lxi/test/hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py", line 34, in <module>
r = nrniv(
File "/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178982/J1073852/spack-build/spack-stage-neuron-develop-arr5lxib65hkgzaekzx7s3nhmkjjfyp3/spack-build-arr5lxi/test/hoctests/test_nrniv-launch_py/tests/test_nrniv-launch.py", line 23, in nrniv
return subprocess.run(
File "/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/lib/python3.10/subprocess.py", line 505, in run
stdout, stderr = process.communicate(input, timeout=timeout)
File "/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/lib/python3.10/subprocess.py", line 1154, in communicate
stdout, stderr = self._communicate(input, endtime, timeout)
File "/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/lib/python3.10/subprocess.py", line 2006, in _communicate
self._check_timeout(endtime, orig_timeout, stdout, stderr)
File "/gpfs/bbp.cscs.ch/ssd/apps/bsd/2023-02-23/stage_externals/install_gcc-12.2.0-skylake/python-3.10.8-rvn6l5/lib/python3.10/subprocess.py", line 1198, in _check_timeout
raise TimeoutExpired(
subprocess.TimeoutExpired: Command '['/gpfs/bbp.cscs.ch/ssd/gitlab_map_jobs/bbpcihpcproj12/P178982/J1073852/spack-build/spack-stage-neuron-develop-arr5lxib65hkgzaekzx7s3nhmkjjfyp3/spack-build-arr5lxi/bin/nrniv', '-isatty', '-nobanner', '-nogui', '-c', 'a=5', '-']' timed out after 5 seconds
Expected result/behavior
We need to make sure that there are no issues with the interpreter exiting with quit() or the Intel compilers
Context
Intel
compiler builds sometimes fail in a test with timeout issues possible related toquit()
function not returning from the interpreter.Rerunning the CI seems to fix the issue and the CI passes.
Overview of the CI issue
See the log below:
Expected result/behavior
We need to make sure that there are no issues with the interpreter exiting with
quit()
or theIntel
compilersCI Logs
https://bbpgitlab.epfl.ch/hpc/cellular/nrn/-/jobs/1073858
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