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NeuronFileLists.cmake
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NeuronFileLists.cmake
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# =======================================================================================
# Lists of header files to install. Difference is whether the dir structure is preserved.
#
# * HEADER_FILES_TO_INSTALL: ${src}/src/dir/header.h -> {bld}/include/header.h
# * STRUCTURED_HEADER_FILES_TO_INSTALL: {src}/src/a/b.h -> {bld}/include/a/b.h
# =======================================================================================
set(STRUCTURED_HEADER_FILES_TO_INSTALL
neuron/cache/mechanism_range.hpp neuron/container/data_handle.hpp
neuron/container/generic_data_handle.hpp neuron/container/non_owning_soa_identifier.hpp
neuron/model_data_fwd.hpp)
set(HEADER_FILES_TO_INSTALL
gnu/mcran4.h
gnu/nrnisaac.h
gnu/nrnran123.h
nrniv/backtrace_utils.h
nrniv/bbsavestate.h
nrnmpi/nrnmpidec.h
nrnoc/cabvars.h
nrnoc/md1redef.h
nrnoc/md2redef.h
nrnoc/membdef.h
nrnoc/membfunc.h
nrnoc/multicore.h
nrnoc/multisplit.h
nrnoc/neuron.h
nrnoc/nmodlmutex.h
nrnoc/nrn_ansi.h
nrnoc/nrncvode.h
nrnoc/nrniv_mf.h
nrnoc/nrnoc_ml.h
nrnoc/nrnredef.h
nrnoc/nrnversionmacros.h
nrnoc/options.h
nrnoc/section_fwd.hpp
nrnoc/treeset.h
oc/hoc.h
oc/hoc_membf.h
oc/hocassrt.h
oc/hocdec.h
oc/hocgetsym.h
oc/hoclist.h
oc/hocparse.h
oc/mech_api.h
oc/memory.hpp
oc/nrnapi.h
oc/nrnassrt.h
oc/nrnmpi.h
oc/nrnrandom.h
oc/oc_ansi.h
oc/ocfunc.h
oc/ocmisc.h
oc/parse_with_deps.hpp
oc/wrap_sprintf.h
scopmath/crout.hpp
scopmath/crout_thread.hpp
scopmath/deflate.hpp
scopmath/dimplic.hpp
scopmath/errcodes.hpp
scopmath/euler.hpp
scopmath/euler_thread.hpp
scopmath/newton.hpp
scopmath/newton_struct.h
scopmath/newton_thread.hpp
scopmath/row_view.hpp
scopmath/runge.hpp
scopmath/scoplib.h
scopmath/simeq.hpp
scopmath/sparse.hpp
scopmath/sparse_thread.hpp
scopmath/ssimplic.hpp
scopmath/ssimplic_thread.hpp
sparse13/spconfig.h
sparse13/spmatrix.h)
# =============================================================================
# Lists of headers populated using check_include_files
# =============================================================================
set(NRN_HEADERS_INCLUDE_LIST)
# =============================================================================
# Files in oc directory
# =============================================================================
set(OC_FILE_LIST
audit.cpp
axis.cpp
code.cpp
code2.cpp
debug.cpp
fileio.cpp
ftime.cpp
functabl.cpp
getsym.cpp
hoc.cpp
hocusr.cpp
hoc_init.cpp
hoc_oop.cpp
list.cpp
math.cpp
oc_mcran4.cpp
memory.cpp
mswinprt.cpp
nonlin.cpp
plot.cpp
plt.cpp
scoprand.cpp
symbol.cpp
version.cpp
x.cpp
xred.cpp)
# =============================================================================
# Files in nrnoc directory
# =============================================================================
set(NRNOC_FILE_LIST
cabcode.cpp
capac.cpp
clamp.cpp
container.cpp
eion.cpp
extcelln.cpp
fadvance.cpp
fstim.cpp
hocprax.cpp
init.cpp
ldifus.cpp
membfunc.cpp
memblist.cpp
nrnnemo.cpp
nrntimeout.cpp
nrnversion.cpp
passive0.cpp
point.cpp
psection.cpp
seclist.cpp
secref.cpp
solve.cpp
synapse.cpp
treeset.cpp
multicore.cpp)
set(NRNOC_GENERATED_FILE_LIST nrnversion.h)
# =============================================================================
# Files in ivoc directory
# =============================================================================
set(IVOC_FILE_LIST
apwindow.cpp
axis.cpp
bndedval.cpp
cbwidget.cpp
checkpnt.cpp
epsprint.cpp
fourier.cpp
gifimage.cpp
graph.cpp
graphvec.cpp
grglyph.cpp
grmanip.cpp
hocmark.cpp
htlist.cpp
idraw.cpp
ivoc.cpp
ivocmain.cpp
ivocrand.cpp
ivocvect.cpp
matrix.cpp
mlinedit.cpp
mymath.cpp
objcmd.cpp
oc2iv.cpp
ocbox.cpp
ocbrowsr.cpp
ocdeck.cpp
ocfile.cpp
ochelp.cpp
oclist.cpp
ocmatrix.cpp
ocnoiv1.cpp
ocobserv.cpp
ocpicker.cpp
ocpointer.cpp
ocptrvector.cpp
octimer.cpp
pwman.cpp
rect.cpp
rubband.cpp
scene.cpp
scenepic.cpp
strfun.cpp
symchoos.cpp
utility.cpp
xmenu.cpp
xyview.cpp)
if(MINGW)
list(APPEND IVOC_FILE_LIST ivocwin.cpp)
else()
list(APPEND IVOC_FILE_LIST field.cpp xdep.cpp)
endif()
# =============================================================================
# Files in nrniv directory
# =============================================================================
set(NRNIV_FILE_LIST
backtrace_utils.cpp
bbsavestate.cpp
classreg.cpp
cxprop.cpp
datapath.cpp
finithnd.cpp
glinerec.cpp
hocmech.cpp
impedanc.cpp
kschan.cpp
kssingle.cpp
linmod.cpp
linmod1.cpp
matrixmap.cpp
memory_usage.cpp
multisplit.cpp
ndatclas.cpp
netpar.cpp
nmodlrandom.cpp
nonlinz.cpp
nrncore_write.cpp
nrncore_write/callbacks/nrncore_callbacks.cpp
nrncore_write/data/cell_group.cpp
nrncore_write/data/datum_indices.cpp
nrncore_write/io/nrncore_io.cpp
nrncore_write/utils/nrncore_utils.cpp
nrndae.cpp
nrnmenu.cpp
nrnpy.cpp
nrnste.cpp
nvector_nrnserial_ld.cpp
nvector_nrnthread.cpp
nvector_nrnthread_ld.cpp
ocjump.cpp
partrans.cpp
ppshape.cpp
prcellstate.cpp
pysecname2sec.cpp
rotate3d.cpp
savstate.cpp
secbrows.cpp
shape.cpp
shapeplt.cpp
spaceplt.cpp
splitcell.cpp
symdir.cpp
vrecord.cpp)
# =============================================================================
# Files from coreneuron/permute that get compiled also for NEURON
# =============================================================================
set(NODEORDEROPTIM_FILE_LIST balance.cpp cellorder.cpp cellorder1.cpp cellorder2.cpp
node_permute.cpp)
# =============================================================================
# Files in nrncvode directory
# =============================================================================
set(NRNCVODE_FILE_LIST
cvodeobj.cpp
cvodestb.cpp
cvtrset.cpp
netcvode.cpp
nrndaspk.cpp
occvode.cpp
tqueue.cpp)
# =============================================================================
# Files in sundials directory
# =============================================================================
nrn_create_file_list(
SUNDIALS_CVODES
"${PROJECT_SOURCE_DIR}/src/sundials/cvodes"
cvband.c
cvbandpre.c
cvbbdpre.c
cvdense.c
cvdiag.c
cvodea.c
cvodes.c
cvodesio.c
cvspgmr.c)
nrn_create_file_list(
SUNDIALS_IDA
"${PROJECT_SOURCE_DIR}/src/sundials/ida"
idaband.c
idabbdpre.c
ida.c
idadense.c
idaic.c
idaio.c
idaspgmr.c)
nrn_create_file_list(
SUNDIALS_SHARED
"${PROJECT_SOURCE_DIR}/src/sundials/shared"
band.c
dense.c
iterative.c
nvector.c
nvector_serial.c
smalldense.c
spgmr.c
sundialsmath.c)
set(NRN_SUNDIALS_SRC_FILES ${SUNDIALS_CVODES} ${SUNDIALS_IDA} ${SUNDIALS_SHARED})
set(SPARSE_FILES_LIST bksub.cpp getelm.cpp lineq.cpp prmat.cpp subrows.cpp)
# scopmath sources
set(SCOPMATH_FILES_LIST
abort.cpp
advance.cpp
boundary.cpp
crank.cpp
scoperf.cpp
expfit.cpp
exprand.cpp
f2cmisc.cpp
factoria.cpp
force.cpp
gauss.cpp
getmem.cpp
harmonic.cpp
hyperbol.cpp
invert.cpp
lag.cpp
legendre.cpp
normrand.cpp
perpulse.cpp
perstep.cpp
poisrand.cpp
poisson.cpp
praxis.cpp
pulse.cpp
ramp.cpp
revhyper.cpp
revsawto.cpp
revsigmo.cpp
romberg.cpp
sawtooth.cpp
sigmoid.cpp
spline.cpp
squarewa.cpp
step.cpp
threshol.cpp
tridiag.cpp)
set(NRNMPI_FILES_LIST nrnmpi.cpp memory_usage.cpp bbsmpipack.cpp mpispike.cpp)
# nrnpython sources (only if ${NRN_ENABLE_PYTHON_DYNAMIC} is OFF}
set(NRNPYTHON_FILES_LIST
nrnpython.cpp
nrnpy_hoc.cpp
nrnpy_nrn.cpp
nrnpy_p2h.cpp
grids.cpp
rxd.cpp
rxd_extracellular.cpp
rxd_intracellular.cpp
rxd_vol.cpp
rxd_marching_cubes.cpp
rxd_llgramarea.cpp)
set(IVOS_FILES_LIST observe.cpp resource.cpp)
set(MPI_DYNAMIC_INCLUDE nrnmpi_dynam.h nrnmpi_dynam_cinc nrnmpi_dynam_wrappers.inc)
set(NRN_MUSIC_FILES_LIST nrnmusic.cpp)
set(NRN_PARALLEL_FILES_LIST
bbs.cpp
bbsclimpi.cpp
bbsdirectmpi.cpp
bbslocal.cpp
bbslsrv.cpp
bbssrv2mpi.cpp
bbssrvmpi.cpp
ocbbs.cpp)
# =============================================================================
# Top level directories under src
# =============================================================================
set(NRN_OC_SRC_DIR ${PROJECT_SOURCE_DIR}/src/oc)
set(NRN_NRNOC_SRC_DIR ${PROJECT_SOURCE_DIR}/src/nrnoc)
set(NRN_NRNOC_BUILD_DIR ${PROJECT_BINARY_DIR}/src/nrnoc)
set(NRN_IVOC_SRC_DIR ${PROJECT_SOURCE_DIR}/src/ivoc)
set(NRN_NODEORDEROPTIM_SRC_DIR ${PROJECT_SOURCE_DIR}/src/coreneuron/permute)
set(NRN_NRNCVODE_SRC_DIR ${PROJECT_SOURCE_DIR}/src/nrncvode)
set(NRN_NRNIV_SRC_DIR ${PROJECT_SOURCE_DIR}/src/nrniv)
set(NRN_IVOS_SRC_DIR ${PROJECT_SOURCE_DIR}/src/ivos)
set(NRN_MUSIC_SRC_DIR ${PROJECT_SOURCE_DIR}/src/neuronmusic)
set(NRN_PARALLEL_SRC_DIR ${PROJECT_SOURCE_DIR}/src/parallel)
# =============================================================================
# Create source file lists by gathering from various directories
# =============================================================================
nrn_create_file_list(NRN_OC_SRC_FILES ${NRN_OC_SRC_DIR} ${OC_FILE_LIST})
nrn_create_file_list(NRN_NRNOC_SRC_FILES ${NRN_NRNOC_SRC_DIR} ${NRNOC_FILE_LIST})
nrn_create_file_list(NRN_NRNOC_SRC_FILES ${NRN_NRNOC_BUILD_DIR} ${NRNOC_GENERATED_FILE_LIST})
nrn_create_file_list(NRN_IVOC_SRC_FILES ${NRN_IVOC_SRC_DIR} ${IVOC_FILE_LIST})
nrn_create_file_list(NRN_NODEORDEROPTIM_SRC_FILES ${NRN_NODEORDEROPTIM_SRC_DIR}
${NODEORDEROPTIM_FILE_LIST})
list(APPEND NRN_NODEORDEROPTIM_SRC_FILES ${PROJECT_SOURCE_DIR}/src/coreneuron/utils/lpt.cpp)
nrn_create_file_list(NRN_NRNCVODE_SRC_FILES ${NRN_NRNCVODE_SRC_DIR} ${NRNCVODE_FILE_LIST})
nrn_create_file_list(NRN_NRNIV_SRC_FILES ${NRN_NRNIV_SRC_DIR} ${NRNIV_FILE_LIST})
nrn_create_file_list(NRN_PARALLEL_SRC_FILES ${NRN_PARALLEL_SRC_DIR} ${NRN_PARALLEL_FILES_LIST})
if(NRN_ENABLE_MPI)
nrn_create_file_list(NRN_PARALLEL_SRC_FILES ${PROJECT_SOURCE_DIR}/src/nrniv
nvector_nrnparallel_ld.cpp)
nrn_create_file_list(NRN_PARALLEL_SRC_FILES ${PROJECT_SOURCE_DIR}/src/sundials/shared
nvector_parallel.c)
endif()
nrn_create_file_list(NRN_SPARSE_SRC_FILES ${PROJECT_SOURCE_DIR}/src/sparse ${SPARSE_FILES_LIST})
nrn_create_file_list(NRN_SCOPMATH_SRC_FILES ${PROJECT_SOURCE_DIR}/src/scopmath
${SCOPMATH_FILES_LIST})
nrn_create_file_list(NRN_NRNMPI_SRC_FILES ${PROJECT_SOURCE_DIR}/src/nrnmpi ${NRNMPI_FILES_LIST})
nrn_create_file_list(NRN_NRNPYTHON_SRC_FILES ${PROJECT_SOURCE_DIR}/src/nrnpython
${NRNPYTHON_FILES_LIST})
nrn_create_file_list(NRN_BIN_SRC_FILES ${PROJECT_SOURCE_DIR}/src/ivoc/ nrnmain.cpp)
nrn_create_file_list(NRN_BIN_SRC_FILES ${PROJECT_SOURCE_DIR}/src/oc/ ockludge.cpp modlreg.cpp)
nrn_create_file_list(NRNMPI_DYNAMIC_INCLUDE_FILE ${PROJECT_SOURCE_DIR}/src/nrnmpi
${MPI_DYNAMIC_INCLUDE})
nrn_create_file_list(NRN_IVOS_SRC_FILES ${NRN_IVOS_SRC_DIR} ${IVOS_FILES_LIST})
nrn_create_file_list(NRN_MUSIC_SRC_FILES ${NRN_MUSIC_SRC_DIR} ${NRN_MUSIC_FILES_LIST})
list(APPEND NRN_OC_SRC_FILES ${PROJECT_BINARY_DIR}/src/oc/hocusr.h)
list(APPEND NRN_NMODL_SRC_FILES ${NRN_MODLUNIT_SRC_DIR}/units.cpp)
# =============================================================================
# Create mswin install lists needed for setup_exe target
# =============================================================================
if(MINGW)
set(MSWIN_SRC_DIR ${PROJECT_SOURCE_DIR}/src/mswin)
nrn_create_file_list(MSWIN_FILES ${PROJECT_SOURCE_DIR}/src/parallel test0.hoc test0.py)
list(APPEND MSWIN_FILES ${MSWIN_SRC_DIR}/notes.txt)
list(APPEND NRN_MODLUNIT_SRC_FILES ${PROJECT_SOURCE_DIR}/src/mswin/extra/d2upath.cpp)
list(APPEND NRN_NMODL_SRC_FILES ${PROJECT_SOURCE_DIR}/src/mswin/extra/d2upath.cpp)
list(APPEND NRN_OC_SRC_FILES ${PROJECT_SOURCE_DIR}/src/mswin/extra/d2upath.cpp)
nrn_create_file_list(MSWIN_BIN_FILES ${MSWIN_SRC_DIR} nrniv.ico nrniv10.ico nmodl2a.ico)
nrn_create_file_list(
MSWIN_LIB_FILES
${MSWIN_SRC_DIR}/lib
bshstart.sh
neuron2.sh
neuron3.sh
mknrndl2.sh
mknrndll.sh
modlunit.sh)
list(APPEND MSWIN_LIB_FILES ${PROJECT_BINARY_DIR}/src/mswin/lib/mknrndll.mak)
endif()