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CMakeLists.txt
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CMakeLists.txt
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cmake_minimum_required(VERSION 3.15 FATAL_ERROR)
# Note that this needs to happen **before** the call to project(...). This is because CMake reads
# the CRAYPE_LINK_TYPE environment variable inside the call to project(...) and sets various flags
# and properties based on its value. Because we are so early in the CMake processing, we have to
# figure out for ourselves whether or not we are running on a Cray system by looking for Cray
# environment variables directly.
if(DEFINED ENV{CRAYPE_VERSION})
# Older versions of the Cray software prefer static linking by default, which doesn't work with
# NEURON with some compilers (GCC and Intel at the time of writing). Note that this variable will
# not be set in the compiler and linker runtime environments, so we are relying on CMake baking in
# the correct compiler flags based on the value we set here. In more recent versions of the Cray
# software the default has changed; CMake knows about this in v3.15.3 and newer, but to support
# older CMake versions we still need to set this explicitly. See:
# https://github.com/neuronsimulator/nrn/issues/1153
set(ENV{CRAYPE_LINK_TYPE} dynamic)
message(STATUS "Cray system detected...setting CRAYPE_LINK_TYPE=dynamic")
endif()
project(
NEURON
VERSION 9.0.0
LANGUAGES C CXX
HOMEPAGE_URL "https://www.neuron.yale.edu/neuron/")
# =============================================================================
# CMake common project settings
# =============================================================================
set(CMAKE_CXX_STANDARD 17)
set(CMAKE_CXX_STANDARD_REQUIRED ON)
set(CMAKE_CXX_EXTENSIONS OFF)
if(NOT "cxx_std_17" IN_LIST CMAKE_CXX_COMPILE_FEATURES)
message(
FATAL_ERROR
"This compiler does not fully support C++17, choose a higher version or another compiler.")
endif()
# =============================================================================
# CMake common project settings
# =============================================================================
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/bin)
set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib)
set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${CMAKE_BINARY_DIR}/lib)
# =============================================================================
# Include default build options
# =============================================================================
list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake)
include(BuildOptionDefaults)
# =============================================================================
# Build options (boolean)
# =============================================================================
option(NRN_ENABLE_DOCS "Build documentation" ${NRN_ENABLE_DOCS_DEFAULT})
# This is useful for readthedocs-style builds and the documentation CI, where the actual
# installation of NEURON comes from an installed binary wheel.
option(
NRN_ENABLE_DOCS_WITH_EXTERNAL_INSTALLATION
"Build documentation without building NEURON. It will be assumed that import neuron works, nrnivmodl is in PATH, etc."
${NRN_ENABLE_DOCS_WITH_EXTERNAL_INSTALLATION_DEFAULT})
mark_as_advanced(NRN_ENABLE_DOCS_WITH_EXTERNAL_INSTALLATION)
option(NRN_ENABLE_SHARED "Build shared libraries (otherwise static library)"
${NRN_ENABLE_SHARED_DEFAULT})
option(NRN_ENABLE_INTERVIEWS "Enable GUI with INTERVIEWS" ${NRN_ENABLE_INTERVIEWS_DEFAULT})
option(NRN_ENABLE_MECH_DLL_STYLE "Dynamically load nrnmech shared library"
${NRN_ENABLE_MECH_DLL_STYLE_DEFAULT})
option(NRN_ENABLE_DISCRETE_EVENT_OBSERVER "Enable Observer to be a subclass of DiscreteEvent"
${NRN_ENABLE_DISCRETE_EVENT_OBSERVER_DEFAULT})
option(NRN_ENABLE_PYTHON "Enable Python interpreter support (default python3 fallback to python)"
${NRN_ENABLE_PYTHON_DEFAULT})
option(NRN_ENABLE_THREADS "Allow use of multithreading" ${NRN_ENABLE_THREADS_DEFAULT})
option(NRN_ENABLE_MPI "Enable MPI support" ${NRN_ENABLE_MPI_DEFAULT})
option(NRN_ENABLE_MUSIC "Enable MUSIC support" ${NRN_ENABLE_MUSIC_DEFAULT})
option(NRN_ENABLE_RX3D "Enable rx3d support" ${NRN_ENABLE_RX3D_DEFAULT})
option(NRN_ENABLE_CORENEURON "Enable CoreNEURON support" ${NRN_ENABLE_CORENEURON_DEFAULT})
option(NRN_ENABLE_BACKTRACE "Enable pretty-printed backtraces" ${NRN_ENABLE_BACKTRACE_DEFAULT})
option(NRN_ENABLE_TESTS "Enable unit tests" ${NRN_ENABLE_TESTS_DEFAULT})
option(NRN_ENABLE_MATH_OPT "Enable extra math optimisations (to enable SIMD)"
${NRN_ENABLE_MATH_OPT_DEFAULT})
set(NRN_ENABLE_MODEL_TESTS
"${NRN_ENABLE_MODEL_TESTS_DEFAULT}"
CACHE STRING "Comma-separated list of detailed models to enable tests of.")
# parse NRN_ENABLE_MODEL_TESTS as list
string(REPLACE "," ";" NRN_ENABLE_MODEL_TESTS "${NRN_ENABLE_MODEL_TESTS}")
option(
NRN_ENABLE_PERFORMANCE_TESTS
"Enable tests that measure performance. These are known to be unreliable when run on busy/oversubscribed machines such as CI runners."
${NRN_ENABLE_PERFORMANCE_TESTS_DEFAULT})
# This can be helpful in very specific CI build configurations, where ccache is used *and* different
# CI builds are built under different directories.
option(NRN_AVOID_ABSOLUTE_PATHS
"Avoid embedding absolute paths in generated code (ccache optimisation)"
${NRN_AVOID_ABSOLUTE_PATHS_DEFAULT})
mark_as_advanced(NRN_AVOID_ABSOLUTE_PATHS)
# note that if CoreNEURON is enabled then it is not necessary to enable this option
option(NRN_ENABLE_MOD_COMPATIBILITY "Enable CoreNEURON compatibility for MOD files"
${NRN_ENABLE_MOD_COMPATIBILITY_DEFAULT})
option(NRN_ENABLE_REL_RPATH "Use relative RPATH in binaries. for relocatable installs/Python"
${NRN_ENABLE_REL_RPATH_DEFAULT})
option(NRN_BINARY_DIST_BUILD ${NRN_BINARY_DIST_BUILD_DEFAULT})
option(NRN_WHEEL_STATIC_READLINE "Use static readline libraries for the wheels."
${NRN_WHEEL_STATIC_READLINE_DEFAULT})
mark_as_advanced(NRN_ENABLE_REL_RPATH)
mark_as_advanced(NRN_BINARY_DIST_BUILD)
# =============================================================================
# Build options (string)
# =============================================================================
# ~~~
# NEURON module installation:
# - OFF : do not install
# - ON : install in ${CMAKE_INSTALL_PREFIX} (default)
# NOTE: When building the wheel, this is set to OFF.
# Dynamic Python version support:
# - NRN_ENABLE_PYTHON_DYNAMIC=OFF : libnrniv is linked against a single Python version, which
# can be steered with PYTHON_EXECUTABLE
# - NRN_ENABLE_PYTHON_DYNAMIC=ON : libnrniv is not linked against Python, distinct libnrnpython
# libraries are built for each configured Python major.minor
# version but are only linked against the relevant libpython
# if NRN_LINK_AGAINST_PYTHON is true, which is by default only
# the case on windows.
# nrniv/special still works in the absence of Python, and
# dynamically loads the appropriate libnrnpythonX.Y as needed
# - NRN_PYTHON_DYNAMIC=pythonX;... : semicolon separated list of Python versions used when
# NRN_ENABLE_PYTHON_DYNAMIC=ON, if not set then it defaults to
# PYTHON_EXECUTABLE. This must include all major.minor
# versions that you want nrniv -python to be able to load. If
# this *is* set then the first entry will be used as the
# default Python version.
# Extra options for extended Python tests:
# - NRN_PYTHON_EXTRA_FOR_TESTS=... : semicolon separated list of Python executables that NEURON
# is *not* built against. These are only used for testing, and
# there must be no overlap in major.minor versions between
# this list and the set of versions that NEURON *is* built
# against. This allows tests of failure modes.
# Dynamic MPI support:
# - OFF : nrnmpi is linked into libnrniv.so
# - ON : nrnmpi interface consistent with default mpi is built and loaded dynamically
# at run time (nrniv still works in the absence of any mpi at all).
# - <string> : semicolon (;) separated list of MPI's bin directories to create a separate
# libnrnmpi_xxx.so interface for each. When nrniv is launched with the -mpi argument,
# the first mpi found will determine which interface is dynamically loaded."
# Rx3D Cython generated files compiler optimization level. 0 is default.
# Specific coverage files:
# - OFF : Disable code coverage.
# - ON : Collect code coverage for files (default all).
# - <string> : semicolon (;) separated list of files to collect coverage.
# ~~~
option(NRN_ENABLE_MODULE_INSTALL
"Enable installation of NEURON Python module for regular CMake builds"
${NRN_ENABLE_MODULE_INSTALL_DEFAULT})
option(NRN_ENABLE_PYTHON_DYNAMIC "Enable dynamic Python version support"
${NRN_ENABLE_PYTHON_DYNAMIC_DEFAULT})
option(NRN_LINK_AGAINST_PYTHON
"Link libnrnpythonX.Y against libpythonX.Y when NRN_ENABLE_PYTHON_DYNAMIC=ON"
${NRN_LINK_AGAINST_PYTHON_DEFAULT})
set(NRN_PYTHON_DYNAMIC
""
CACHE
STRING
"semicolon (;) separated list of python executables to create interface for (default python3)"
)
set(NRN_PYTHON_EXTRA_FOR_TESTS
""
CACHE STRING "semicolon (;) separated list of python executables to use for testing")
option(NRN_ENABLE_MPI_DYNAMIC "Enable dynamic MPI library support" OFF)
set(NRN_MPI_DYNAMIC
""
CACHE
STRING
"semicolon (;) separated list of MPI include directories to build against (default to first found mpi)"
)
set(NRN_RX3D_OPT_LEVEL
"${NRN_RX3D_OPT_LEVEL_DEFAULT}"
CACHE STRING "Optimization level for Cython generated files (non-zero may compile slowly)")
option(NRN_ENABLE_COVERAGE "EnableCode Coverage (make cover_begin, make cover_html)" OFF)
set(NRN_COVERAGE_FILES
""
CACHE STRING "semicolon (;) separated list of files to collect code coverage")
set(NRN_NMODL_CXX_FLAGS
"${NRN_NMODL_CXX_FLAGS_DEFAULT}"
CACHE STRING "space separated list of flags to be added to host tools (nocmodl, modlunit")
separate_arguments(NRN_NMODL_CXX_FLAGS UNIX_COMMAND ${NRN_NMODL_CXX_FLAGS})
set(NRN_EXTRA_CXX_FLAGS
""
CACHE STRING "Extra compiler flags for NEURON source files")
separate_arguments(NRN_EXTRA_CXX_FLAGS)
list(APPEND NRN_COMPILE_FLAGS ${NRN_EXTRA_CXX_FLAGS})
set(NRN_EXTRA_MECH_CXX_FLAGS
""
CACHE STRING "Extra compiler flags for translated NEURON mechanisms")
separate_arguments(NRN_EXTRA_MECH_CXX_FLAGS)
option(NRN_ENABLE_PROFILING "Enable profiling" ${NRN_ENABLE_PROFILING_DEFAULT})
set(NRN_PROFILER
"${NRN_PROFILER_DEFAULT}"
CACHE STRING "Set which profiler to build against ('caliper', 'likwid')")
# =============================================================================
# Include cmake modules
# =============================================================================
# sub-directorty containing project submodules
set(THIRD_PARTY_DIRECTORY "${PROJECT_SOURCE_DIR}/external")
list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake/modules)
include(cmake/PlatformHelper.cmake)
include(cmake/CompilerHelper.cmake)
include(cmake/MacroHelper.cmake)
include(cmake/RpathHelper.cmake)
include(cmake/ExternalProjectHelper.cmake)
include(cmake/modules/FindPythonModule.cmake)
include(cmake/Coverage.cmake)
# set CMAKE_BUILD_TYPE and associated flags using allowableBuildTypes and CMAKE_BUILD_TYPE_DEFAULT
set(allowableBuildTypes Custom Debug Release RelWithDebInfo Fast FastDebug)
include(ReleaseDebugAutoFlags)
# Try and emit an intelligent warning if the version number currently set in the CMake project(...)
# call is inconsistent with the output of git describe.
include(cmake/CheckGitDescribeCompatibility.cmake)
# Save the version information from project(...) to an nrnsemanticversion.h header in the build
# directory. This separate from nrnversion.h, which includes information about the latest git
# commit, because it should change less frequently, but it is included in many more files.
set(NRN_VERSION_MAJOR ${PROJECT_VERSION_MAJOR})
set(NRN_VERSION_MINOR ${PROJECT_VERSION_MINOR})
set(NRN_VERSION_PATCH ${PROJECT_VERSION_PATCH})
configure_file(src/nrnoc/nrnsemanticversion.h.in include/nrnsemanticversion.h @ONLY)
# =============================================================================
# Add coding-conventions submodule so we can use helper functions defined there
# =============================================================================
set(CODING_CONV_PREFIX "NRN")
set(${CODING_CONV_PREFIX}_3RDPARTY_DIR "external")
set(CODING_CONV_CMAKE "${PROJECT_SOURCE_DIR}/${NRN_3RDPARTY_DIR}/coding-conventions/cpp/cmake")
if(NOT EXISTS "${CODING_CONV_CMAKE}/3rdparty.cmake")
# Abort with a helpful message if the current source tree lacks .git information, as in that case
# we're not going to be able to initialise the submodule.
nrn_submodule_file_not_found("3rdparty.cmake")
nrn_initialize_submodule(external/coding-conventions)
endif()
include("${CODING_CONV_CMAKE}/3rdparty.cmake")
cpp_cc_git_submodule(Random123)
cpp_cc_git_submodule(eigen)
# =================================================================================================
# Enable sanitizer support if the NRN_SANITIZERS variable is set. Comes befores PythonHelper.cmake.
# =================================================================================================
include(cmake/SanitizerHelper.cmake)
# Make a CMake list NRN_SANITIZERS_LIST
string(REPLACE "," ";" NRN_SANITIZERS_LIST "${NRN_SANITIZERS}")
# =================================================================================================
# Juggle PYTHON_EXECUTABLE and NRN_ENABLE_PYTHON_DYNAMIC to make sure that:
#
# * NRN_DEFAULT_PYTHON_EXECUTABLE is the default Python version, and NRN_DEFAULT_PYTHON_INCLUDES and
# NRN_DEFAULT_PYTHON_LIBRARIES are its include direcory and library
# * NRN_PYTHON_EXECUTABLES is a list of absolute paths to all Python executables to be built against
# (length >=1 if NRN_ENABLE_PYTHON_DYNAMIC else == 1)
# * NRN_PYTHON_VERSIONS (3.8, 3.11, ...), NRN_PYTHON_INCLUDES and NRN_PYTHON_LIBRARIES are populated
# with values patching NRN_PYTHON_EXECUTABLES
# * NRN_PYTHON_COUNT is set to the number of entries in those lists (i.e. number of Pythons), and
# NRN_PYTHON_ITERATION_LIMIT is set to ${NRN_PYTHON_COUNT} - 1
# =================================================================================================
set(NRN_MINIMUM_PYTHON_VERSION 3.8)
include(cmake/PythonHelper.cmake)
# This needs NRN_DEFAULT_PYTHON_EXECUTABLE, which comes from PythonHelper.cmake
if(NRN_SANITIZERS)
configure_file(bin/nrn-enable-sanitizer.in bin/nrn-enable-sanitizer @ONLY)
install(PROGRAMS ${PROJECT_BINARY_DIR}/bin/nrn-enable-sanitizer
DESTINATION ${CMAKE_INSTALL_PREFIX}/bin)
endif()
# =============================================================================
# Find required packages
# =============================================================================
find_package(BISON REQUIRED)
find_package(FLEX 2.6 REQUIRED)
# When shipping the wheels we want to link readline libs statically.
if(NRN_WHEEL_STATIC_READLINE)
# CMake will prefer dynamic libraries over static ones. With the following construct we make sure
# we get them.
set(ORIGINAL_CMAKE_FIND_LIBRARY_SUFFIXES ${CMAKE_FIND_LIBRARY_SUFFIXES})
set(CMAKE_FIND_LIBRARY_SUFFIXES ".a")
endif()
find_package(Readline REQUIRED)
if(READLINE_FOUND)
# MAC libedit.3.dylib does not have rl_event_hook Readline_LIBRARY may be a binary lib or (on the
# MAC) a tbd file that points to the library and mentions all its definitions. this part has to be
# prior to adding the nrniv subdirectory.
execute_process(COMMAND grep -q rl_event_hook ${Readline_LIBRARY} RESULT_VARIABLE result)
if(NOT result EQUAL 0)
# define for src/oc/hoc.cpp
set(DEF_RL_GETC_FUNCTION use_rl_getc_function)
endif()
# If we are not using self contained, static readline library created for building wheel then only
# look for curses and termcap
if(NOT NRN_WHEEL_STATIC_READLINE)
find_package(Curses QUIET)
find_package(Termcap QUIET)
endif()
endif()
# Reset original CMake library suffixes
if(ORIGINAL_CMAKE_FIND_LIBRARY_SUFFIXES)
set(CMAKE_FIND_LIBRARY_SUFFIXES ${ORIGINAL_CMAKE_FIND_LIBRARY_SUFFIXES})
endif()
if(NRN_ENABLE_RX3D)
if(NOT NRN_ENABLE_PYTHON)
message(SEND_ERROR "NRN_ENABLE_RX3D requires NRN_ENABLE_PYTHON feature.")
else()
find_package(Cython REQUIRED)
if(CYTHON_VERSION VERSION_GREATER_EQUAL 3)
message(FATAL_ERROR "Cython 3+ is not supported")
endif()
endif()
endif()
if(MINGW)
find_package(Termcap REQUIRED)
endif()
# =============================================================================
# Enable MPI
# =============================================================================
if(NRN_ENABLE_MPI)
# find_package(MPI REQUIRED) has a CMAKE_OSX_ARCHITECTURES edge case
nrn_mpi_find_package()
set(NRNMPI 1)
# avoid linking to C++ bindings
add_compile_definitions(MPI_NO_CPPBIND=1 OMPI_SKIP_MPICXX=1 MPICH_SKIP_MPICXX=1)
# Launching mpi executable with full path can mangle different python versions and libraries (see
# issue #894). ${MPIEXEC_NAME} would reinsert the full path, but ${CMAKE_COMMAND} -E env
# ${MPIEXEC_NAME} does not.
get_filename_component(MPIEXEC_NAME ${MPIEXEC_EXECUTABLE} NAME)
# Detect if we have an OpenMPI v2 or older.
execute_process(
COMMAND "${MPIEXEC_EXECUTABLE}" --version
RESULT_VARIABLE OPENMPI_TEST_RESULT
OUTPUT_VARIABLE OPENMPI_TEST_OUTPUT)
set(NRN_HAVE_OPENMPI2_OR_LESS OFF)
if(${OPENMPI_TEST_RESULT} EQUAL 0 AND "${OPENMPI_TEST_OUTPUT}" MATCHES
"^mpiexec \\(OpenRTE\\) ([0-9\.]+)")
set(NRN_OPENMPI_VERSION "${CMAKE_MATCH_1}")
message(STATUS "Detected OpenMPI ${NRN_OPENMPI_VERSION}")
if("${NRN_OPENMPI_VERSION}" VERSION_LESS 3)
set(NRN_HAVE_OPENMPI2_OR_LESS ON)
message(STATUS "OpenMPI<v3: `mpirun python` may not work, try `mpirun special -python`.")
message(STATUS "See also: https://www.neuron.yale.edu/phpBB/viewtopic.php?t=4297")
endif()
endif()
else()
set(NRNMPI 0)
endif()
# =============================================================================
# Enable MUSIC MUlti SImulation Coordinator
# =============================================================================
if(NRN_ENABLE_MUSIC)
if(NOT NRN_ENABLE_MPI)
message(FATAL "MUSIC requires -DNRN_ENABLE_MPI=ON")
endif()
if(NOT NRN_ENABLE_PYTHON)
message(FATAL "MUSIC requires -DNRN_ENABLE_PYTHON=ON")
endif()
find_package(Cython REQUIRED)
if(CYTHON_VERSION VERSION_GREATER_EQUAL 3)
message(FATAL_ERROR "Cython 3+ is not supported")
endif()
find_package(MUSIC REQUIRED)
set(NRN_MUSIC 1)
endif()
# =============================================================================
# Enable backward
# =============================================================================
if(NRN_ENABLE_BACKTRACE)
set(NRN_USE_BACKWARD 1)
nrn_add_external_project(backward)
else()
set(NRN_USE_BACKWARD 0)
endif()
# =============================================================================
# Enable Interviews
# =============================================================================
if(NRN_ENABLE_INTERVIEWS)
# x11 is not required on windows
if(NOT NRN_WINDOWS_BUILD)
find_package(X11 QUIET)
if(NOT X11_FOUND)
if(APPLE)
message(SEND_ERROR "You must install XQuartz from https://www.xquartz.org/ to build iv")
else()
message(
SEND_ERROR
"You must install X11 to build iv e.g. 'apt install libx11-dev libxcomposite-dev' on Ubuntu"
)
endif()
endif()
include_directories(${X11_INCLUDE_DIR})
endif()
find_package(iv QUIET PATHS ${IV_DIR}/lib/cmake ${IV_DIR})
if(iv_FOUND)
message(STATUS "Using external Interviews from ${IV_DIR}")
get_target_property(IV_INCLUDE_DIR interviews INTERFACE_INCLUDE_DIRECTORIES)
else()
nrn_add_external_project(iv)
include_directories(SYSTEM external/iv/src/include)
set(IV_DIR ${PROJECT_SOURCE_DIR}/external/iv)
set(IV_INCLUDE_DIR ${PROJECT_SOURCE_DIR}/external/iv/src/include)
endif()
set(HAVE_IV 1)
else()
set(HAVE_IV 0)
endif()
# =============================================================================
# Enable Python support
# =============================================================================
if(NRN_ENABLE_PYTHON)
# Make sure the USE_PYTHON macro is defined in the C++ code
list(APPEND NRN_COMPILE_DEFS USE_PYTHON)
endif()
# =============================================================================
# Enable Threads support
# =============================================================================
if(NRN_ENABLE_THREADS)
# Note that at least GCC requires -pthread to be passed even when using std::thread.
set(THREADS_PREFER_PTHREAD_FLAG ON)
find_package(Threads REQUIRED)
list(APPEND NRN_COMPILE_DEFS NRN_ENABLE_THREADS)
endif()
# Some files are shared by NEURON and CoreNEURON and use #if CORENRN_BUILD to distinguish between
# which build is occurring.
list(APPEND NRN_COMPILE_DEFS CORENRN_BUILD=0)
# =============================================================================
# Profiler/Instrumentation Options
# =============================================================================
if(NRN_ENABLE_PROFILING)
add_definitions("-DNRN_PROFILING")
if(NRN_PROFILER STREQUAL "caliper")
find_package(caliper REQUIRED)
include_directories(${caliper_INCLUDE_DIR})
add_definitions("-DNRN_CALIPER")
set(CALIPER_LIB "caliper")
elseif(NRN_PROFILER STREQUAL "likwid")
include(GetLIKWID)
set(LIKWID_LIB nrn_likwid)
endif()
endif()
# =============================================================================
# Set library type
# =============================================================================
if(NRN_ENABLE_SHARED)
set(NRN_LIBRARY_TYPE "SHARED")
else()
set(NRN_LIBRARY_TYPE "STATIC")
set(CMAKE_POSITION_INDEPENDENT_CODE ON)
endif()
# =============================================================================
# Add helper CMake modules AFTER setting options
# =============================================================================
include(NeuronFileLists)
include(MPIDynamicHelper)
# Set variable to include mpi headers
set(NRN_INCLUDE_MPI_HEADERS OFF)
list(LENGTH NRN_MPI_LIBNAME_LIST num_mpi)
if(NOT NRN_ENABLE_MPI_DYNAMIC OR ${num_mpi} EQUAL 1)
set(NRN_INCLUDE_MPI_HEADERS ON)
endif()
# initialize CLI11 submodule
cpp_cc_git_submodule(CLI11 BUILD PACKAGE CLI11 REQUIRED)
# =============================================================================
# Enable CoreNEURON support
# =============================================================================
if(NRN_ENABLE_CORENEURON)
message(STATUS "Building CoreNEURON")
# =============================================================================
# Include cmake modules path
# =============================================================================
list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/cmake/coreneuron
${PROJECT_SOURCE_DIR}/cmake/coreneuron/packages)
# If NEURON tests are enabled then enable CoreNEURON tests too
set(CORENRN_ENABLE_UNIT_TESTS
${NRN_ENABLE_TESTS}
CACHE BOOL "" FORCE)
if(NRN_ENABLE_PROFILING)
if(NRN_PROFILER STREQUAL "caliper")
set(CORENRN_ENABLE_CALIPER_PROFILING ON)
elseif(NRN_PROFILER STREQUAL "likwid")
set(CORENRN_ENABLE_LIKWID_PROFILING ON)
endif()
endif()
set(CORENEURON_DIR ${PROJECT_SOURCE_DIR}/src/coreneuron)
add_subdirectory(${PROJECT_SOURCE_DIR}/src/coreneuron)
# By default `nrnivmodl` should look for `nrnivmodl-core` in the NEURON install prefix.
set(cnrn_prefix "${CMAKE_INSTALL_PREFIX}")
# CoreNEURON exports this list of flags as a property; turn it into a variable in this scope. If
# CoreNEURON is installed externally then this is exported into coreneuron-config.cmake.
get_property(CORENRN_LIB_LINK_FLAGS GLOBAL PROPERTY CORENRN_LIB_LINK_FLAGS)
get_property(CORENRN_NEURON_LINK_FLAGS GLOBAL PROPERTY CORENRN_NEURON_LINK_FLAGS)
get_property(CORENRN_ENABLE_SHARED GLOBAL PROPERTY CORENRN_ENABLE_SHARED)
get_property(CORENRN_NMODL_BINARY GLOBAL PROPERTY CORENRN_NMODL_BINARY)
# NEURON tests that link against CoreNEURON need to depend on it.
set(CORENEURON_TARGET_TO_DEPEND coreneuron-for-tests)
# When we are using CoreNEURON, OpenACC and shared libraries then it is important that the first
# library *compiled by nvc++* to be opened is linked against OpenACC, to avoid the NVIDIA runtime
# being initialised without OpenACC. See:
# https://forums.developer.nvidia.com/t/dynamically-loading-an-openacc-enabled-shared-library-from-an-executable-compiled-with-nvc-does-not-work/210968/5
# When we build CoreNEURON with NVHPC then we often build NEURON with NVHPC too, and if we load
# NEURON from Python then the first compiled-by-nvc++ thing to be loaded is the NEURON Python
# module (hoc.XXX.so). It is, therefore, important that we link that with -acc.
separate_arguments(CORENRN_NEURON_LINK_FLAGS)
set(NRN_LINK_FLAGS_FOR_ENTRY_POINTS ${CORENRN_NEURON_LINK_FLAGS})
endif()
# This needs to be after all modifications to NRN_LINK_FLAGS
include(ConfigFileSetting)
# =============================================================================
# Set install location for libraries (before src/nrniv)
# =============================================================================
# ~~~
# Classically, the install destination of the share folder for mac/linux has
# been <prefix>/share/nrn but for linux it has been <prefix>. For now we keep
# this distinction.
# Also, the classic location for shared libraries has been <prefix>/<arch>/lib
# and for max/linux we have move this to <inst>/lib. But windows has classically
# expected these shared libraries in <prefix>/bin (reduces the PATH and expected
# by ctypes in the neuron module.) So for now we keep that distinction as
# well. Setting these here as setup.py.in needs it.
# ~~~
if(MINGW)
set(NRN_INSTALL_SHARE_DIR ${CMAKE_INSTALL_PREFIX})
set(NRN_BUILD_SHARE_DIR ${CMAKE_BINARY_DIR})
set(NRN_INSTALL_SHARE_LIB_DIR ${CMAKE_INSTALL_PREFIX}/bin)
else()
set(NRN_INSTALL_SHARE_DIR ${CMAKE_INSTALL_PREFIX}/share/nrn)
set(NRN_BUILD_SHARE_DIR ${CMAKE_BINARY_DIR}/share/nrn)
set(NRN_INSTALL_SHARE_LIB_DIR ${CMAKE_INSTALL_PREFIX}/lib)
endif()
# =============================================================================
# Add project directories AFTER CMake modules
# =============================================================================
add_subdirectory(src/sparse13)
add_subdirectory(src/gnu)
add_subdirectory(src/modlunit)
add_subdirectory(src/nmodl)
add_subdirectory(src/nrniv)
# Collect the environment variables that are needed to execute NEURON from the build directory. This
# is used when configuring tests, and when building documentation targets.
function(prepend_to_var var new_path)
set(old_list "${NRN_RUN_FROM_BUILD_DIR_ENV}")
set(new_val "${var}=${new_path}")
if(DEFINED ENV{${var}} AND NOT "$ENV{${var}}" STREQUAL "")
string(APPEND new_val ":$ENV{${var}}")
endif()
list(APPEND old_list "${new_val}")
set(NRN_RUN_FROM_BUILD_DIR_ENV
"${old_list}"
PARENT_SCOPE)
endfunction()
set(NRN_RUN_FROM_BUILD_DIR_ENV "NEURONHOME=${PROJECT_BINARY_DIR}/share/nrn"
"NRNHOME=${PROJECT_BINARY_DIR}")
prepend_to_var(PATH "${PROJECT_BINARY_DIR}/bin")
prepend_to_var(LD_LIBRARY_PATH "${PROJECT_BINARY_DIR}/lib")
if(NRN_ENABLE_CORENEURON)
list(APPEND NRN_RUN_FROM_BUILD_DIR_ENV "CORENRNHOME=${PROJECT_BINARY_DIR}")
endif()
if(NRN_ENABLE_PYTHON)
prepend_to_var(PYTHONPATH "${PROJECT_BINARY_DIR}/lib/python:${PROJECT_SOURCE_DIR}/test/rxd")
endif()
add_subdirectory(bin)
if(NRN_ENABLE_PYTHON)
add_subdirectory(src/nrnpython)
endif()
if(NRN_MACOS_BUILD)
add_subdirectory(src/mac)
endif()
if(MINGW)
add_subdirectory(src/mswin)
endif()
if(NRN_ENABLE_DOCS)
if(APPLE AND "address" IN_LIST NRN_SANITIZERS)
# IPython notebook execution doesn't have enough magic to preload ASan
message(FATAL_ERROR "macOS + ASan + docs is not supported")
endif()
# Do we need to set extra environment variables to find NEURON?
set(NRN_DOCS_COMMAND_PREFIX ${CMAKE_COMMAND} -E env)
if(NOT NRN_ENABLE_DOCS_WITH_EXTERNAL_INSTALLATION)
list(APPEND NRN_DOCS_COMMAND_PREFIX ${NRN_RUN_FROM_BUILD_DIR_ENV})
endif()
# Make sure all dependencies are available
find_package(Doxygen REQUIRED)
find_program(FFMPEG_EXECUTABLE ffmpeg REQUIRED)
find_program(JUPYTER_EXECUTABLE jupyter REQUIRED)
find_program(PANDOC_EXECUTABLE pandoc REQUIRED)
find_package(Sphinx REQUIRED)
set(docs_requirements_file "${PROJECT_SOURCE_DIR}/docs/docs_requirements.txt")
file(STRINGS "${docs_requirements_file}" docs_requirements)
# Make sure CMake reruns if docs_requirements.txt changeds.
set_property(GLOBAL APPEND PROPERTY CMAKE_CONFIGURE_DEPENDS "${docs_requirements_file}")
foreach(docs_requirement ${docs_requirements})
if(${skip_next})
set(skip_next FALSE)
continue()
endif()
# This is needed for ipython, which is pip installable but not importable.
if("${docs_requirement}" STREQUAL "# do not check import of next line")
set(skip_next TRUE)
elseif("${docs_requirement}" MATCHES "^([a-zA-Z_][a-zA-Z0-9_]*)$")
nrn_find_python_module(MODULE ${CMAKE_MATCH_0} REQUIRED)
endif()
endforeach()
# =============================================================================
# Setup Doxygen documentation
# =============================================================================
# generate Doxyfile with correct source paths
configure_file(${PROJECT_SOURCE_DIR}/docs/Doxyfile.in ${PROJECT_BINARY_DIR}/Doxyfile)
add_custom_target(
doxygen
COMMAND ${NRN_DOCS_COMMAND_PREFIX} ${DOXYGEN_EXECUTABLE} ${PROJECT_BINARY_DIR}/Doxyfile
WORKING_DIRECTORY ${PROJECT_BINARY_DIR}
COMMENT "Generating API documentation with Doxygen"
VERBATIM)
# =============================================================================
# Setup Sphinx documentation
# =============================================================================
# Target to execute && convert notebooks to html. Note that neuron must be available for python
# import, so we use NRN_RUN_FROM_BUILD_DIR_ENV. See docs/README.md.
add_custom_target(
notebooks
COMMAND ${NRN_DOCS_COMMAND_PREFIX} NEURON_MODULE_OPTIONS="-nogui" bash
${PROJECT_SOURCE_DIR}/docs/notebooks.sh
WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/docs)
if(NRN_ENABLE_DOCS_WITH_EXTERNAL_INSTALLATION)
message(STATUS "**Not** making the notebooks target depend on the rest of the NEURON build.")
message(STATUS "Documentation building will probably fail if you haven't installed NEURON.")
else()
# We need NEURON to execute the notebooks. If we're building documentation as part of a normal
# build, this means we need to schedule the documenation targets sufficiently late in the build.
add_dependencies(notebooks hoc_module rxdmath)
endif()
add_custom_target(
sphinx
COMMAND ${NRN_DOCS_COMMAND_PREFIX} ${SPHINX_EXECUTABLE} -j auto -b html
"${PROJECT_SOURCE_DIR}/docs" "${PROJECT_SOURCE_DIR}/docs/_build"
COMMAND echo "Copy/Paste to Browser file://${PROJECT_SOURCE_DIR}/docs/_build/index.html"
WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/docs
COMMENT "Generating documentation with Sphinx")
# Executing notebooks will add outputs in-place. We don't want those committed to the repo. This
# commands cleans them out.
add_custom_target(
notebooks-clean
COMMAND ${NRN_DOCS_COMMAND_PREFIX} bash ${PROJECT_SOURCE_DIR}/docs/notebooks.sh --clean
WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}/docs)
# =============================================================================
# Build full docs
# =============================================================================
add_custom_target(
docs
COMMAND ${CMAKE_COMMAND} --build ${PROJECT_BINARY_DIR} --target doxygen
COMMAND ${CMAKE_COMMAND} --build ${PROJECT_BINARY_DIR} --target notebooks
COMMAND ${CMAKE_COMMAND} --build ${PROJECT_BINARY_DIR} --target sphinx
COMMAND ${CMAKE_COMMAND} --build ${PROJECT_BINARY_DIR} --target notebooks-clean
COMMAND echo "The HTML docs are at file://${PROJECT_SOURCE_DIR}/docs/_build/index.html"
COMMENT "Generating full documentation")
endif()
# =============================================================================
# Black, Clang-format, Cmake-format (see $PROJECT_SOURCE_DIR/.bbp-project.yaml)
# =============================================================================
add_custom_target(
format
COMMAND ${PROJECT_SOURCE_DIR}/external/coding-conventions/bin/format
WORKING_DIRECTORY ${PROJECT_SOURCE_DIR})
# Prepare a shell script to format only files modified with respect to master branch
file(
WRITE ${CMAKE_CURRENT_BINARY_DIR}/format-pr.sh
"\
#!bash\n\
set -e\n\
cmd='cd ${PROJECT_SOURCE_DIR} && external/coding-conventions/bin/format `git diff --name-only master`'\n\
echo $cmd\n\
cd ${PROJECT_SOURCE_DIR} && external/coding-conventions/bin/format `git diff --name-only master`\n\
")
add_custom_target(
format-pr
COMMAND bash ${CMAKE_CURRENT_BINARY_DIR}/format-pr.sh
COMMENT "Format only files modified with respect to master branch."
WORKING_DIRECTORY ${PROJECT_SOURCE_DIR})
# =============================================================================
# ~~~
# Update hh.mod for CoreNEURON compatibility
# - Replace GLOBAL variable by RANGE
# - Comment out TABLE
# ~~~
# =============================================================================
if(NRN_ENABLE_CORENEURON OR NRN_ENABLE_MOD_COMPATIBILITY)
set(GLOBAL_VAR_TOGGLE_COMMAND "'s/ GLOBAL minf/ RANGE minf/'")
set(TABLE_VAR_TOGGLE_COMMAND "'s/ TABLE minf/ :TABLE minf/'")
else()
set(GLOBAL_VAR_TOGGLE_COMMAND "'s/ RANGE minf/ GLOBAL minf/'")
set(TABLE_VAR_TOGGLE_COMMAND "'s/ :TABLE minf/ TABLE minf/'")
endif()
separate_arguments(GLOBAL_VAR_TOGGLE_COMMAND UNIX_COMMAND "${GLOBAL_VAR_TOGGLE_COMMAND}")
separate_arguments(TABLE_VAR_TOGGLE_COMMAND UNIX_COMMAND "${TABLE_VAR_TOGGLE_COMMAND}")
add_custom_target(
hh_update
COMMAND sed ${GLOBAL_VAR_TOGGLE_COMMAND} ${CMAKE_SOURCE_DIR}/src/nrnoc/hh.mod >
${CMAKE_BINARY_DIR}/hh.mod.1
COMMAND sed ${TABLE_VAR_TOGGLE_COMMAND} ${CMAKE_BINARY_DIR}/hh.mod.1 >
${CMAKE_BINARY_DIR}/hh.mod.2
COMMAND ${CMAKE_COMMAND} -E copy_if_different ${CMAKE_BINARY_DIR}/hh.mod.2
${CMAKE_SOURCE_DIR}/src/nrnoc/hh.mod
COMMAND ${CMAKE_COMMAND} -E remove ${CMAKE_BINARY_DIR}/hh.mod.1 ${CMAKE_BINARY_DIR}/hh.mod.2
COMMENT "Update hh.mod for CoreNEURON compatibility"
VERBATIM)
add_dependencies(nrniv_lib hh_update)
# =============================================================================
# Generate help_data.dat
# =============================================================================
if(NRN_ENABLE_PYTHON)
add_custom_target(
help_data_dat
COMMAND ${CMAKE_COMMAND} -E make_directory ${PROJECT_BINARY_DIR}/lib/python/neuron
COMMAND ${NRN_DEFAULT_PYTHON_EXECUTABLE} ${PROJECT_SOURCE_DIR}/docs/parse_rst.py
${PROJECT_SOURCE_DIR}/docs/python ${PROJECT_BINARY_DIR}/lib/python/neuron/help_data.dat
COMMENT "Generating help_data.dat"
VERBATIM)
add_dependencies(nrniv_lib help_data_dat)
# also ensure help_data.dat is copied to the install location
install(FILES ${PROJECT_BINARY_DIR}/lib/python/neuron/help_data.dat DESTINATION lib/python/neuron)
endif()
include("${CODING_CONV_CMAKE}/build-time-copy.cmake") # cpp_cc_build_time_copy
function(copy_share_subdir_at_build_time)
cmake_parse_arguments(opt "" "SUBDIR;TARGET" "" ${ARGN})
set(src_dir "${PROJECT_SOURCE_DIR}/share/${opt_SUBDIR}")
set(tgt_dir "${NRN_BUILD_SHARE_DIR}/${opt_SUBDIR}")
# Note CONFIGURE_DEPENDS causes GLOB mismatch for MINGW, see #2277
file(
GLOB_RECURSE files_to_copy
LIST_DIRECTORIES false
RELATIVE "${src_dir}"
CONFIGURE_DEPENDS "${src_dir}/*")
foreach(file_to_copy ${files_to_copy})
cpp_cc_build_time_copy(
INPUT "${src_dir}/${file_to_copy}"
OUTPUT "${tgt_dir}/${file_to_copy}"
NO_TARGET)
list(APPEND files_to_depend_on "${tgt_dir}/${file_to_copy}")
endforeach()
add_custom_target(
${opt_TARGET}
COMMENT "Copying ${src_dir} to ${tgt_dir}"
DEPENDS ${files_to_depend_on})
endfunction()
copy_share_subdir_at_build_time(SUBDIR demo TARGET copy_share_demo_to_build)
copy_share_subdir_at_build_time(SUBDIR lib TARGET copy_share_lib_to_build)
# =============================================================================
# Add tests if enabled
# =============================================================================
if(NRN_ENABLE_TESTS)
# If CoreNEURON + NMODL are enabled, Catch2 will already have been set up...
if(NOT TARGET Catch2::Catch2)
nrn_add_external_project(catch2)
set(CATCH_DIR ${PROJECT_SOURCE_DIR}/external/catch2)
list(APPEND CMAKE_MODULE_PATH ${PROJECT_SOURCE_DIR}/external/catch2/extras)
include(Catch)
endif()
include(CTest)
if(NRN_ENABLE_PYTHON)
# Need this for *all* Python versions we try and run tests with
nrn_find_python_module(MODULE pytest ALL REQUIRED)
nrn_find_python_module(MODULE pytest_cov ALL)
if(NOT PYTEST_COV_FOUND)
message(STATUS "pytest-cov package not installed. Python coverage will not be generated.")
endif()
endif()
add_dependencies(nrniv_lib copy_share_demo_to_build)
# Execute neurondemo as part of the build because it lazily calls nrnivmodl. If we don't do this
# then test_neurondemo.py will run nrnivmodl in a clean build, and report compilation warnings as
# unexpected stderr.
set(neurondemo_prefix
"${PROJECT_BINARY_DIR}/share/nrn/demo/release/${CMAKE_HOST_SYSTEM_PROCESSOR}")
set(neurondemo_files
"${neurondemo_prefix}/special"
"${neurondemo_prefix}/${CMAKE_SHARED_LIBRARY_PREFIX}nrnmech${CMAKE_SHARED_LIBRARY_SUFFIX}")
add_custom_command(
OUTPUT ${neurondemo_files}
COMMAND ${CMAKE_COMMAND} -E env ${NRN_RUN_FROM_BUILD_DIR_ENV}
${NRN_SANITIZER_ENABLE_ENVIRONMENT} "${PROJECT_BINARY_DIR}/bin/nrnivmodl"
DEPENDS nrnivmodl_dependency
WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/share/nrn/demo/release
VERBATIM)
add_custom_target(generate-neurondemo-mechanism-library ALL DEPENDS ${neurondemo_files} nrniv
copy_share_lib_to_build)
# Initialize the submodule *before* including the test/CMakeLists.txt that uses it. This ensures
# that the test infrastructure can find the names of the input data files and set up rules to copy
# them into the test working directories.
set(backup "${${CODING_CONV_PREFIX}_3RDPARTY_DIR}")
set(${CODING_CONV_PREFIX}_3RDPARTY_DIR "test")
cpp_cc_git_submodule(rxd/testdata)
set(${CODING_CONV_PREFIX}_3RDPARTY_DIR "${backup}")
add_subdirectory(test)
endif()
# =============================================================================
# Install targets
# =============================================================================
install(
DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/share/lib
DESTINATION ${NRN_INSTALL_SHARE_DIR}
PATTERN "python" EXCLUDE)
install(DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/share/demo DESTINATION ${NRN_INSTALL_SHARE_DIR})
install(FILES ${PROJECT_BINARY_DIR}/share/nrn/lib/nrnunits.lib
${PROJECT_BINARY_DIR}/share/nrn/lib/nrn.defaults
DESTINATION ${NRN_INSTALL_SHARE_DIR}/lib)
install(PROGRAMS ${CMAKE_CURRENT_SOURCE_DIR}/share/lib/cleanup
DESTINATION ${NRN_INSTALL_SHARE_DIR}/lib)
# Copy NEURON headers that will be included in the installation into the build directory.
set(headers_in_build_dir)
foreach(header_below_src ${HEADER_FILES_TO_INSTALL})
get_filename_component(header_name "${header_below_src}" NAME)
set(output_name "${PROJECT_BINARY_DIR}/include/${header_name}")
cpp_cc_build_time_copy(
INPUT "${PROJECT_SOURCE_DIR}/src/${header_below_src}"
OUTPUT "${output_name}"
NO_TARGET)
list(APPEND headers_in_build_dir "${output_name}")
endforeach()
foreach(header_below_src ${STRUCTURED_HEADER_FILES_TO_INSTALL})
set(output_name "${PROJECT_BINARY_DIR}/include/${header_below_src}")
cpp_cc_build_time_copy(
INPUT "${PROJECT_SOURCE_DIR}/src/${header_below_src}"
OUTPUT "${output_name}"
NO_TARGET)
list(APPEND headers_in_build_dir "${output_name}")
endforeach()
add_custom_target(
copy_headers_to_build
COMMENT "Copying headers to build directory"
DEPENDS ${headers_in_build_dir})
add_dependencies(nrniv_lib copy_headers_to_build)
install(DIRECTORY ${PROJECT_BINARY_DIR}/include DESTINATION ${CMAKE_INSTALL_PREFIX})
if(NRN_MACOS_BUILD)
# universal build for neurondemo needs to be after, or at end of, install
nrn_macos_after_install()
endif()
# =============================================================================
# Copy bash executable for windows
# =============================================================================
if(MINGW)
# ~~~
# nrniv.cpp calls nrnpyenv.sh with absolute path to bash.exe
# this is sufficient on the build machine since a full
# development environment exists. On the users install machine
# using a setup.exe distribution, the setup.ex will contain a
# minimal development environment with sufficient mingw programs
# to allow nrnpyenv.sh to work. (see nrn/mingw_files/nrnmingwenv.sh)
# ~~~
find_file(BASH_EXE bash.exe DOC "DOS path to bash.exe")
message(STATUS "Found bash.exe at ${BASH_EXE}")
if("${BASH_EXE}" STREQUAL "BASH_EXE-NOTFOUND")
set(BASH_EXE "f:/msys64/usr/bin/bash.exe")
message(WARNING "Can not find bash.exe, trying to use ${BASH_EXE}")
endif()
install(PROGRAMS ${BASH_EXE} DESTINATION ${CMAKE_INSTALL_PREFIX}/mingw/usr/bin)
endif()
# =============================================================================
# Installation steps for backward compatibility
# =============================================================================
if(NOT NRN_WINDOWS_BUILD)
# create arch folder under prefix with symlink to bin and lib
nrn_install_dir_symlink(${CMAKE_INSTALL_PREFIX}/bin
${CMAKE_INSTALL_PREFIX}/${CMAKE_HOST_SYSTEM_PROCESSOR}/bin)
nrn_install_dir_symlink(${CMAKE_INSTALL_PREFIX}/lib
${CMAKE_INSTALL_PREFIX}/${CMAKE_HOST_SYSTEM_PROCESSOR}/lib)
endif()
# =============================================================================
# Print build status
# =============================================================================
# just for printing the compiler flags in the build status
string(TOUPPER ${CMAKE_BUILD_TYPE} BUILD_TYPE_UPPER)
if(BUILD_TYPE_UPPER MATCHES "CUSTOM")
set(COMPILER_FLAGS "${CMAKE_CXX_FLAGS}")
else()
set(COMPILER_FLAGS "${CMAKE_CXX_FLAGS_${BUILD_TYPE_UPPER}}")
endif()
string(JOIN " " COMPILER_FLAGS "${COMPILER_FLAGS}" ${NRN_COMPILE_FLAGS} ${CMAKE_CXX_FLAGS})
message(STATUS "")
message(STATUS "Configured NEURON ${PROJECT_VERSION}")
message(STATUS "")
message(STATUS "You can now build NEURON using:")
message(STATUS " cmake --build . --parallel 8 [--target TARGET]")
message(STATUS "You might want to adjust the number of parallel build jobs for your system.")
message(STATUS "Some non-default targets you might want to build:")
message(STATUS "--------------+--------------------------------------------------------------")
message(STATUS " Target | Description")
message(STATUS "--------------+--------------------------------------------------------------")
message(STATUS "install | Will install NEURON to: ${CMAKE_INSTALL_PREFIX}")
message(STATUS " | Change the install location of NEURON using:")
message(STATUS " | cmake <src_path> -DCMAKE_INSTALL_PREFIX=<install_path>")
message(
STATUS
"docs | Build full docs. Calls targets: doxygen, notebooks, sphinx, notebooks-clean")
message(STATUS "uninstall | Removes files installed by make install (todo)")
message(STATUS "--------------+--------------------------------------------------------------")
message(STATUS " Build option | Status")
message(STATUS "--------------+--------------------------------------------------------------")
message(STATUS "C COMPILER | ${CMAKE_C_COMPILER}")
message(STATUS "CXX COMPILER | ${CMAKE_CXX_COMPILER}")
message(STATUS "BUILD_TYPE | ${CMAKE_BUILD_TYPE} (allowed: ${allowableBuildTypes})")
message(STATUS "COMPILE FLAGS | ${COMPILER_FLAGS}")
message(STATUS "Shared | ${NRN_ENABLE_SHARED}")
message(STATUS "MPI | ${NRN_ENABLE_MPI}")
if(NRN_ENABLE_MPI)
message(STATUS " DYNAMIC | ${NRN_ENABLE_MPI_DYNAMIC}")
if(NRN_ENABLE_MPI_DYNAMIC)
list(LENGTH NRN_MPI_LIBNAME_LIST _num_mpi)
math(EXPR num_mpi "${_num_mpi} - 1")
foreach(val RANGE ${num_mpi})
list(GET NRN_MPI_LIBNAME_LIST ${val} libname)
list(GET NRN_MPI_INCLUDE_LIST ${val} include)
message(STATUS " LIBNAME | ${libname}")
message(STATUS " INC | ${include}")
endforeach(val)
else()
if(NRN_INCLUDE_MPI_HEADERS)
message(STATUS " INC | ${MPI_C_INCLUDE_DIRS}")
else()
message(STATUS " INC | N/A")
endif()
message(STATUS " LIB | ${MPI_C_LIBRARIES}")
endif()
endif()
if(NRN_ENABLE_MUSIC)
message(STATUS "MUSIC | ${MUSIC_LIBDIR}")
endif()
message(STATUS "Python | ${NRN_ENABLE_PYTHON}")
if(NRN_ENABLE_PYTHON)
message(STATUS " DYNAMIC | ${NRN_ENABLE_PYTHON_DYNAMIC}")
message(STATUS " MODULE | ${NRN_ENABLE_MODULE_INSTALL}")
foreach(val RANGE ${NRN_PYTHON_ITERATION_LIMIT})
list(GET NRN_PYTHON_EXECUTABLES ${val} exe)