/
azure-pipelines.yml
310 lines (302 loc) · 12.5 KB
/
azure-pipelines.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
trigger:
# start a new build for every push
batch: false
branches:
include:
- 'main'
- 'maint/*'
pr:
branches:
include:
- '*' # must quote since "*" is a YAML reserved character; we want a string
stages:
- stage: Check
jobs:
- job: Skip
pool:
vmImage: 'ubuntu-latest'
variables:
DECODE_PERCENTS: 'false'
RET: 'true'
BUILD_REASON: $(Build.Reason)
steps:
- bash: |
git_log=`git log --format=oneline -n 1 --skip=1`
echo "##vso[task.setvariable variable=log]$git_log"
- bash: echo "##vso[task.setvariable variable=RET]false"
condition: and(eq(variables.BUILD_REASON, 'PullRequest'), or(contains(variables.log, '[skip azp]'), contains(variables.log, '[azp skip]'), contains(variables.log, '[skip ci]'), contains(variables.log, '[ci skip]')))
- bash: echo "##vso[task.setvariable variable=start_main;isOutput=true]$RET"
name: result
- stage: Style
variables:
AZURE_CI: 'true'
jobs:
- job: All
pool:
vmImage: 'ubuntu-latest'
variables:
PYTHON_VERSION: '3.11'
PYTHON_ARCH: 'x64'
steps:
- bash: echo $(COMMIT_MSG)
- task: UsePythonVersion@0
inputs:
versionSpec: $(PYTHON_VERSION)
architecture: $(PYTHON_ARCH)
addToPath: true
displayName: 'Get Python'
- bash: |
set -eo pipefail
python -m pip install --progress-bar off --upgrade pip build
python -m pip install --progress-bar off -ve .[hdf5,test]
python -m pip uninstall -yq pytest-qt # don't want to set up display, etc. for this
pre-commit install --install-hooks
displayName: Install dependencies
- bash: |
make pre-commit
displayName: make pre-commit
condition: always()
- bash: |
make nesting
displayName: make nesting
condition: always()
- bash: |
make check-readme
displayName: make check-readme
condition: always()
- bash: mypy
displayName: mypy
condition: always()
- bash: vulture
displayName: vulture
condition: always()
- stage: Test
condition: and(succeeded(), eq(dependencies.Check.outputs['Skip.result.start_main'], 'true'))
dependsOn: ['Style', 'Check']
variables:
AZURE_CI: 'true'
jobs:
- job: Ultraslow_PG
pool:
vmImage: 'ubuntu-22.04'
variables:
DISPLAY: ':99'
OPENBLAS_NUM_THREADS: '1'
steps:
- bash: |
set -e
./tools/setup_xvfb.sh
sudo apt install -yq tcsh
displayName: 'Install Ubuntu dependencies'
- bash: |
source tools/get_minimal_commands.sh
displayName: 'Install minimal commands'
- bash: |
echo $PATH
mne_surf2bem --version
fsl_rigid_register --version
displayName: 'Test minimal commands'
- task: UsePythonVersion@0
inputs:
versionSpec: '3.9'
architecture: 'x64'
addToPath: true
displayName: 'Get Python'
- bash: |
set -e
python -m pip install --progress-bar off --upgrade pip
python -m pip install --progress-bar off "mne-qt-browser[opengl] @ git+https://github.com/mne-tools/mne-qt-browser.git@main" pyvista scikit-learn pytest-error-for-skips python-picard qtpy nibabel sphinx-gallery -r tools/pyqt6_requirements.txt
python -m pip uninstall -yq mne
python -m pip install --progress-bar off --upgrade -e .[test]
displayName: 'Install dependencies with pip'
- bash: |
set -e
mne sys_info -pd
mne sys_info -pd | grep "qtpy .*(PyQt6=.*)$"
displayName: Print config
- bash: |
set -e
LD_DEBUG=libs python -c "from PyQt6.QtWidgets import QApplication, QWidget; app = QApplication([]); import matplotlib; matplotlib.use('QtAgg'); import matplotlib.pyplot as plt; plt.figure()"
- bash: source tools/get_testing_version.sh
displayName: 'Get testing version'
- task: Cache@2
inputs:
key: $(testing_version)
path: /home/vsts/mne_data
displayName: 'Cache testing data'
- script: python -c "import mne; mne.datasets.testing.data_path(verbose=True)"
displayName: 'Get test data'
- script: pytest --error-for-skips -m "ultraslowtest or pgtest" --tb=short --cov=mne --cov-report=xml --cov-report=html -vv mne
displayName: 'slow and mne-qt-browser tests'
# Coverage
- bash: bash <(curl -s https://codecov.io/bash)
displayName: 'Codecov'
condition: succeededOrFailed()
- task: PublishTestResults@2
inputs:
testResultsFiles: '**/junit-*.xml'
testRunTitle: 'Publish test results for $(Agent.JobName)'
failTaskOnFailedTests: true
condition: succeededOrFailed()
- task: PublishCodeCoverageResults@1
inputs:
codeCoverageTool: Cobertura
summaryFileLocation: '$(System.DefaultWorkingDirectory)/**/coverage.xml'
reportDirectory: '$(System.DefaultWorkingDirectory)/**/htmlcov'
- job: Qt
pool:
vmImage: 'ubuntu-22.04'
variables:
DISPLAY: ':99'
OPENBLAS_NUM_THREADS: '1'
TEST_OPTIONS: "--tb=short --cov=mne --cov-report=xml --cov-report=html --cov-append -vv mne/viz/_brain mne/viz/backends mne/viz/tests/test_evoked.py mne/gui mne/report"
steps:
- bash: ./tools/setup_xvfb.sh
displayName: 'Install Ubuntu dependencies'
- task: UsePythonVersion@0
inputs:
versionSpec: '3.10'
architecture: 'x64'
addToPath: true
displayName: 'Get Python'
- bash: |
set -e
python -m pip install --progress-bar off --upgrade pip
python -m pip install --progress-bar off --upgrade --pre --only-binary=\"numpy,scipy,matplotlib,vtk\" numpy scipy matplotlib vtk
python -c "import vtk"
python -m pip install --progress-bar off --upgrade -ve .[full,test_extra]
displayName: 'Install dependencies with pip'
- bash: |
set -e
which mne
mne sys_info -pd
python ./tools/check_mne_location.py
displayName: Print config
- bash: source tools/get_testing_version.sh
displayName: 'Get testing version'
- task: Cache@2
inputs:
key: $(testing_version)
path: /home/vsts/mne_data
displayName: 'Cache testing data'
- script: python -c "import mne; mne.datasets.testing.data_path(verbose=True)"
displayName: 'Get test data'
- bash: |
set -e
python -m pip install -r tools/pyqt6_requirements.txt
LD_DEBUG=libs python -c "from PyQt6.QtWidgets import QApplication, QWidget; app = QApplication([]); import matplotlib; matplotlib.use('QtAgg'); import matplotlib.pyplot as plt; plt.figure()"
- bash: |
mne sys_info -pd
mne sys_info -pd | grep "qtpy .* (PyQt6=.*)$"
PYTEST_QT_API=PyQt6 pytest -m "not slowtest" ${TEST_OPTIONS}
python -m pip uninstall -yq PyQt6 PyQt6-sip PyQt6-Qt6
displayName: 'PyQt6'
- bash: |
set -e
python -m pip install "PySide6!=6.7.0"
mne sys_info -pd
mne sys_info -pd | grep "qtpy .* (PySide6=.*)$"
PYTEST_QT_API=PySide6 pytest -m "not slowtest" ${TEST_OPTIONS}
python -m pip uninstall -yq PySide6
displayName: 'PySide6'
- bash: |
set -e
python -m pip install PySide2
mne sys_info -pd
mne sys_info -pd | grep "qtpy .* (PySide2=.*)$"
PYTEST_QT_API=PySide2 pytest -m "not slowtest" ${TEST_OPTIONS}
python -m pip uninstall -yq PySide2
displayName: 'PySide2'
# PyQt5 leaves cruft behind, so run it last
- bash: |
set -e
python -m pip install PyQt5
mne sys_info -pd
mne sys_info -pd | grep "qtpy .* (PyQt5=.*)$"
PYTEST_QT_API=PyQt5 pytest -m "not slowtest" ${TEST_OPTIONS}
python -m pip uninstall -yq PyQt5 PyQt5-sip PyQt5-Qt5
displayName: 'PyQt5'
# Coverage
- bash: bash <(curl -s https://codecov.io/bash)
displayName: 'Codecov'
condition: succeededOrFailed()
- task: PublishTestResults@2
inputs:
testResultsFiles: '**/junit-*.xml'
testRunTitle: 'Publish test results for $(Agent.JobName)'
failTaskOnFailedTests: true
condition: succeededOrFailed()
- task: PublishCodeCoverageResults@1
inputs:
codeCoverageTool: Cobertura
summaryFileLocation: '$(System.DefaultWorkingDirectory)/**/coverage.xml'
reportDirectory: '$(System.DefaultWorkingDirectory)/**/htmlcov'
- job: Windows
pool:
vmImage: 'windows-latest'
variables:
MNE_LOGGING_LEVEL: 'warning'
MNE_FORCE_SERIAL: 'true'
OPENBLAS_NUM_THREADS: '2'
OMP_DYNAMIC: 'false'
PYTHONUNBUFFERED: 1
PYTHONIOENCODING: 'utf-8'
AZURE_CI_WINDOWS: 'true'
PYTHON_ARCH: 'x64'
timeoutInMinutes: 70
strategy:
maxParallel: 4
matrix:
3.9 pip:
TEST_MODE: 'pip'
PYTHON_VERSION: '3.9'
3.12 pip pre:
TEST_MODE: 'pip-pre'
PYTHON_VERSION: '3.12'
steps:
- task: UsePythonVersion@0
inputs:
versionSpec: $(PYTHON_VERSION)
architecture: $(PYTHON_ARCH)
addToPath: true
displayName: 'Get Python'
- bash: |
set -eo pipefail
git clone --depth 1 https://github.com/pyvista/gl-ci-helpers.git
powershell gl-ci-helpers/appveyor/install_opengl.ps1
displayName: Install OpenGL
- bash: ./tools/azure_dependencies.sh
displayName: Install dependencies with pip
- script: pip install -e .
displayName: 'Install MNE-Python dev'
- script: mne sys_info -pd
displayName: 'Print config'
- script: python -c "import numpy; numpy.show_config()"
displayName: Print NumPy config
- script: python -c "import numpy; import scipy.linalg; import sklearn.neighbors; from threadpoolctl import threadpool_info; from pprint import pprint; pprint(threadpool_info())"
displayName: Print threadpoolctl info
- bash: source tools/get_testing_version.sh
displayName: 'Get testing version'
- task: Cache@2
inputs:
key: $(testing_version)
path: C:\Users\VssAdministrator\mne_data
displayName: 'Cache testing data'
- script: python -c "import mne; mne.datasets.testing.data_path(verbose=True)"
displayName: 'Get test data'
- script: pytest -m "not (slowtest or pgtest)" --tb=short --cov=mne --cov-report=xml --cov-report=html -vv mne
displayName: 'Run tests'
- bash: bash <(curl -s https://codecov.io/bash)
displayName: 'Codecov'
condition: succeededOrFailed()
- task: PublishTestResults@2
inputs:
testResultsFiles: '**/junit-*.xml'
testRunTitle: 'Publish test results for $(Agent.JobName) $(TEST_MODE) $(PYTHON_VERSION)'
failTaskOnFailedTests: true
condition: succeededOrFailed()
- task: PublishCodeCoverageResults@1
inputs:
codeCoverageTool: Cobertura
summaryFileLocation: '$(System.DefaultWorkingDirectory)/**/coverage.xml'
reportDirectory: '$(System.DefaultWorkingDirectory)/**/htmlcov'