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antisense oligo efficacy prediction #117

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kexinhuang12345 opened this issue Sep 24, 2021 · 0 comments
Open

antisense oligo efficacy prediction #117

kexinhuang12345 opened this issue Sep 24, 2021 · 0 comments
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help-wanted new-task Request new task.

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@kexinhuang12345
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Describe the problem
Antisense oligonucleotides (ODNs) therapy is a promising Tx class. It binds to mRNA to prevent it from becoming proteins. The efficacy of ODNs to mRNA can be predicted by machine learning. This task requires further mining of available ODNs database since many public ones such as ODNBase and AOBase are not online anymore.

Reference: https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-7-122

Describe the solution you'd like

from tdc.multi_pred import ODN
data = ODN(name = 'DATA_NAME',  path = './data')

Additional context
N/A

@kexinhuang12345 kexinhuang12345 self-assigned this Sep 24, 2021
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