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[BUG] anvi-script-augustus-output-to-external-gene-calls 0 gens parsed #2150

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mloberme opened this issue Oct 19, 2023 · 0 comments
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Short description of the problem

I only have Augustus output in .gtf form, when using the script I get 0 gens parsed.

anvi'o version

Anvio 8

anvi-self-test --version

System info

Linux
Conda installation

Detailed description of the issue

Hi I am having trouble with my Augustus output. I only have a .gtf, because it is part of the Braker3 pipeline. Does the format work with this script? When I try to run it I get:
Num genes parsed 0 and an empty file.

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