We are happy to announce anvi'o v8, with the code name 'marie' after 'Marie Tharp'.
After about 4,200 changes that introduced over 36,000 new lines of code, this stable release of anvi'o represents significant advancements over v7, and introduces many new features for integrated studies of microbial metabolism, genomic inversions, phylogeography of proteins, performance improvements, and fixes for known bugs.
Please see the release notes here, and our new installation instructions here.
Additional restrictions in the free version of Slack makes us question whether we need a more appropriate solution.
If you have benefited from anvi'o Slack, or interested in this discussion, please consider reading this blog post, and share your input by filling this form. Thank you!
We are happy to announce anvi'o v7, with the code name 'hope' after 'Hope E. Hopps'.
This release adds more than 35,000 new lines of code and a myriad of new toys into anvi'o.
Please see the release notes here, and our updated installation instructions here.
We have a minor release that contains a set of bug fixes and critical performance improvements for the program anvi-profile. Please see the installation page to upgrade your anvi'o.
In addition, here are some blog posts that you may be interested:
- Visualizing contig coverages to better understand microbial population structures.
- To dereplicate or not to dereplicate?.
- Visualizing the fate of contigs across metagenomic binning algorithms.
This is a minor release that contains a set of bug fixes our users identified in v6. Please see our up-to-date installation document to upgrade your anvi'o.
In addition, here is a new blog post on our new tool, anvi-export-locus!
We are happy to announce anvi'o v6, "esther":
This release adds more than 16,000 lines of code to v6, and makes available new tools for those who study microbial 'omics.
Please see the release notes here, and our updated installation instructions here.
A new blog post by @Alon Shaiber on how to download microbial genomes from the NCBI and include them in anvi'o 'omics analyses.
Please see our up-to-date installation document to upgrade your anvi'o.
We are happy to announce #anvio v5, "margaret":
This release adds more than 10,000 lines of code to v4, and makes available new tools for those who study metagenomes and pangenomes, and are interested in microbial evolution, ecology, and biochemistry.
Please see the release notes here, and see why you must update your installation yourself! 😇
This version adds about 15,000 new lines of code since the previous, while removing about 7,500, streamlining the anvi'o codebase while making available a plethora of improvements and new toys!
Please see the release notes here, and keep your installation up-to-date!
We now have a public Slack workspace for anvi'o. Come join us to ask questions about anvi'o, follow its development, or participate conversations on how to survive and make sense of 'omics data.
We are are happy to announce a free 2-day anvi'o workshop at the University of California, Irvine. Click here for more information.
Welcome, Eden! See the release notes here, and keep your installation up-to-date!
A new anvi'o version with many bug fixes and new features is out! See the release notes here.
Join us at the Joint Genome Institute for a 2-day anvi'o workshop. The deadline for applications is August 1st. Click here for more information.
Starting from the anvi'o release v2.3.2, you will have access to the anvi'o news through the interactive interface.
Please refer to this blog post if you have any questions or concerns regarding this feature: http://merenlab.org/2017/05/16/anvio-news-panel/