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poetry.lock
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# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand.
[[package]]
name = "antlr4-python3-runtime"
version = "4.9.3"
description = "ANTLR 4.9.3 runtime for Python 3.7"
category = "main"
optional = false
python-versions = "*"
files = [
{file = "antlr4-python3-runtime-4.9.3.tar.gz", hash = "sha256:f224469b4168294902bb1efa80a8bf7855f24c99aef99cbefc1bcd3cce77881b"},
]
[[package]]
name = "arrow"
version = "1.2.3"
description = "Better dates & times for Python"
category = "main"
optional = false
python-versions = ">=3.6"
files = [
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{file = "arrow-1.2.3.tar.gz", hash = "sha256:3934b30ca1b9f292376d9db15b19446088d12ec58629bc3f0da28fd55fb633a1"},
]
[package.dependencies]
python-dateutil = ">=2.7.0"
[[package]]
name = "attrs"
version = "23.1.0"
description = "Classes Without Boilerplate"
category = "main"
optional = false
python-versions = ">=3.7"
files = [
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]
[package.extras]
cov = ["attrs[tests]", "coverage[toml] (>=5.3)"]
dev = ["attrs[docs,tests]", "pre-commit"]
docs = ["furo", "myst-parser", "sphinx", "sphinx-notfound-page", "sphinxcontrib-towncrier", "towncrier", "zope-interface"]
tests = ["attrs[tests-no-zope]", "zope-interface"]
tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "pytest-xdist[psutil]"]
[[package]]
name = "beautifulsoup4"
version = "4.12.2"
description = "Screen-scraping library"
category = "main"
optional = false
python-versions = ">=3.6.0"
files = [
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]
[package.dependencies]
soupsieve = ">1.2"
[package.extras]
html5lib = ["html5lib"]
lxml = ["lxml"]
[[package]]
name = "bioregistry"
version = "0.9.77"
description = "Integrated registry of biological databases and nomenclatures"
category = "main"
optional = false
python-versions = ">=3.8"
files = [
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[package.dependencies]
click = "*"
curies = ">=0.5.6"
more-click = ">=0.1.2"
pydantic = "<2.0"
pystow = ">=0.1.13"
requests = "*"
tqdm = "*"
[package.extras]
align = ["beautifulsoup4", "class-resolver", "defusedxml", "fairsharing-client (>=0.1.0)", "pyyaml", "tabulate"]
charts = ["jinja2", "matplotlib", "matplotlib-venn", "pandas", "seaborn"]
docs = ["autodoc-pydantic", "sphinx", "sphinx-autodoc-typehints (==1.21.1)", "sphinx-automodapi", "sphinx-click", "sphinx-rtd-theme"]
export = ["ndex2", "pyyaml", "rdflib", "rdflib-jsonld"]
gha = ["more-itertools"]
health = ["click-default-group", "jinja2", "pandas", "pyyaml", "tabulate"]
tests = ["coverage", "httpx", "more-itertools", "pytest"]
web = ["bootstrap-flask (<=2.0.0)", "curies[fastapi]", "fastapi", "flask (<2.2.4)", "markdown", "pyyaml", "rdflib", "rdflib-endpoint", "rdflib-jsonld", "uvicorn", "werkzeug (<2.3.0)"]
[[package]]
name = "cachetools"
version = "5.3.1"
description = "Extensible memoizing collections and decorators"
category = "main"
optional = false
python-versions = ">=3.7"
files = [
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]
[[package]]
name = "certifi"
version = "2023.5.7"
description = "Python package for providing Mozilla's CA Bundle."
category = "main"
optional = false
python-versions = ">=3.6"
files = [
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]
[[package]]
name = "cfgraph"
version = "0.2.1"
description = "rdflib collections flattening graph"
category = "main"
optional = false
python-versions = "*"
files = [
{file = "CFGraph-0.2.1.tar.gz", hash = "sha256:b57fe7044a10b8ff65aa3a8a8ddc7d4cd77bf511b42e57289cd52cbc29f8fe74"},
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[package.dependencies]
rdflib = ">=0.4.2"
[[package]]
name = "chardet"
version = "5.1.0"
description = "Universal encoding detector for Python 3"
category = "main"
optional = false
python-versions = ">=3.7"
files = [
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[[package]]
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fqdn = {version = "*", optional = true, markers = "extra == \"format\""}
idna = {version = "*", optional = true, markers = "extra == \"format\""}
isoduration = {version = "*", optional = true, markers = "extra == \"format\""}
jsonpointer = {version = ">1.13", optional = true, markers = "extra == \"format\""}
jsonschema-specifications = ">=2023.03.6"
referencing = ">=0.28.4"
rfc3339-validator = {version = "*", optional = true, markers = "extra == \"format\""}
rfc3987 = {version = "*", optional = true, markers = "extra == \"format\""}
rpds-py = ">=0.7.1"
uri-template = {version = "*", optional = true, markers = "extra == \"format\""}
webcolors = {version = ">=1.11", optional = true, markers = "extra == \"format\""}
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format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339-validator", "rfc3986-validator (>0.1.0)", "uri-template", "webcolors (>=1.11)"]
[[package]]
name = "jsonschema-specifications"
version = "2023.6.1"
description = "The JSON Schema meta-schemas and vocabularies, exposed as a Registry"
category = "main"
optional = false
python-versions = ">=3.8"
files = [
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referencing = ">=0.28.0"
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name = "linkml"
version = "1.5.6"
description = "Linked Open Data Modeling Language"
category = "main"
optional = false
python-versions = ">=3.7.6,<4.0.0"
files = [
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antlr4-python3-runtime = ">=4.9.0,<4.10"
click = ">=7.0"
graphviz = ">=0.10.1"
hbreader = "*"
isodate = ">=0.6.0"
jinja2 = ">=3.1.0"
jsonasobj2 = ">=1.0.3,<2.0.0"
jsonschema = {version = ">=4.0.0", extras = ["format"]}
linkml-dataops = "*"
linkml-runtime = ">=1.5.4"
openpyxl = "*"
parse = "*"
prefixcommons = ">=0.1.7"
prefixmaps = ">=0.1.3"
pydantic = "*"
pyjsg = ">=0.11.6"
pyshex = ">=0.7.20"
pyshexc = ">=0.8.3"
python-dateutil = "*"