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setup.py
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setup.py
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#!/usr/bin/env python
# How to build source distribution
# - python setup.py sdist --format bztar
# - python setup.py sdist --format gztar
# - python setup.py sdist --format zip
# - python setup.py bdist_wheel --universal
# How to build for conda (do both with 2.7 and 3.4)
# - bash conda_build.sh
import os
import sys
from setuptools import setup
MAJOR = 1
MINOR = 3
MICRO = 4
VERSION = "{}.{}.{}".format(MAJOR, MINOR, MICRO)
def write_version_file(fn=None):
if fn is None:
fn = os.path.join(
os.path.dirname(os.path.abspath(__file__)),
os.path.join("pyplink", "version.py"),
)
content = (
"\n# THIS FILE WAS GENERATED AUTOMATICALLY BY PYPLINK SETUP.PY\n"
'pyplink_version = "{version}"\n'
)
a = open(fn, "w")
try:
a.write(content.format(version=VERSION))
finally:
a.close()
def get_requirements():
# Initial requirements
requirements = ["numpy >= 1.8.2", "pandas >= 0.14.1", "six >= 1.9.0"]
# Checking if python 2 (requires mock)
if sys.version_info[0] == 2:
requirements.append(["mock >= 2.0.0"])
return requirements
def setup_package():
# Saving the version into a file
write_version_file()
setup(
zip_safe=False,
name="pyplink",
version=VERSION,
description="Python module to read binary Plink files.",
author="Louis-Philippe Lemieux Perreault",
author_email="louis-philippe.lemieux.perreault@statgen.org",
url="http://www.statgen.org",
license="MIT",
packages=["pyplink", "pyplink.tests"],
package_data={"pyplink.tests": ["data/*"], },
test_suite="pyplink.tests.test_suite",
install_requires=get_requirements(),
classifiers=["Operating System :: POSIX :: Linux",
"Operating System :: MacOS :: MacOS X",
"Operating System :: Microsoft",
"Programming Language :: Python",
"Programming Language :: Python :: 2.7",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.3",
"Programming Language :: Python :: 3.4",
"Programming Language :: Python :: 3.5",
"Programming Language :: Python :: 3.6",
"License :: OSI Approved :: MIT License",
"Topic :: Scientific/Engineering :: Bio-Informatics"],
keywords="bioinformatics format Plink binary",
)
return
if __name__ == "__main__":
setup_package()