Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Clusters With Non-existant Longest GI #21

Open
lcoghill opened this issue Dec 9, 2014 · 0 comments
Open

Clusters With Non-existant Longest GI #21

lcoghill opened this issue Dec 9, 2014 · 0 comments
Labels

Comments

@lcoghill
Copy link
Owner

lcoghill commented Dec 9, 2014

Currently the longest sequence in some clusters, isn't listed in the sequences table. This is due to the fact that the sequences themselves have had their GIs corrected where as not all of the original clusters have. There are also some sequences that were purged before alignments and tree building due to various reasons, so it's possible the longest sequence was lost in the process.

Simple fix. Rebuild the clusters table, checking the longest GI against the sequences table. If it's not there, use the second longest, etc.

@lcoghill lcoghill added the bug label Dec 9, 2014
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
Projects
None yet
Development

No branches or pull requests

1 participant